PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Binding Motif |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Kalax.0363s0007.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 393aa MW: 41620.5 Da PI: 5.2154

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0363s0007.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.2e-12	201	246	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Kalax.0363s0007.1.p 201 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 246 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.32E-17	194	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.26E-13	194	250	No hit	No description
PROSITE profile	PS50888	17.39	196	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-16	198	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-9	201	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	202	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MQPGLNSLSN SAQVTPQLDL QNGSRPTPPL AQQIGNFEGP AVATQDDFLD QMLSSWNEFE 60 PQNGHASSAW DLKQDEDDAV RIGSNRASPF RFDESALLVS KLRQHQISGT TLQQQLVMPR 120 TDVGQNGAVG EGSLFASPNP GLESSIQGLY NGFAGSLQSH PFLNSQNFGD PCGPPAGSAG 180 GAPAQPRQRV RARRGQATDP HSIAERLRRE RIAERMKALQ ELVPNANKTD KASMLDEIID 240 YVKFLQLQVK VLSMSRLGGA AAVTPLVADM SSERGSAIAK ARSSSDGARA LADEDNAMAL 300 TEQQVAKLME EDMGSAMQYL QGKGLCLMPI SLATVISTAT CQPRSSLLHN RNSNGMFVAN 360 GDGPTSPSVS VLTVQSTAFG NGVNDATSGS MP*

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MQPGLNSLSN SAQVTPQLDL QNGSRPTPPL AQQIGNFEGP AVATQDDFLD QMLSSWNEFE  60
PQNGHASSAW DLKQDEDDAV RIGSNRASPF RFDESALLVS KLRQHQISGT TLQQQLVMPR  120
TDVGQNGAVG EGSLFASPNP GLESSIQGLY NGFAGSLQSH PFLNSQNFGD PCGPPAGSAG  180
GAPAQPRQRV RARRGQATDP HSIAERLRRE RIAERMKALQ ELVPNANKTD KASMLDEIID  240
YVKFLQLQVK VLSMSRLGGA AAVTPLVADM SSERGSAIAK ARSSSDGARA LADEDNAMAL  300
TEQQVAKLME EDMGSAMQYL QGKGLCLMPI SLATVISTAT CQPRSSLLHN RNSNGMFVAN  360
GDGPTSPSVS VLTVQSTAFG NGVNDATSGS MP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	205	210	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007138416.1	1e-125	hypothetical protein PHAVU_009G207000g
Swissprot	Q9ZUG9	2e-82	BH066_ARATH; Transcription factor bHLH66
TrEMBL	V7AYL9	1e-124	V7AYL9_PHAVU; Uncharacterized protein
STRING	XP_007138416.1	1e-125	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	9e-62	LJRHL1-like 1

Link Out ? help Back to Top
Phytozome	Kalax.0363s0007.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]