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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0363s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB_related | ||||||||
Protein Properties | Length: 740aa MW: 81983.1 Da PI: 7.4529 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.9 | 4.8e-08 | 56 | 98 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + a +q+G++ +++I +++ + q++++++ + Kalax.0363s0006.1.p 56 AWTRQEEESFFTALRQFGKN-FEKITLRVQ-SKNKDQVRHYYYRL 98 6*****************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.35E-10 | 42 | 103 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.5E-5 | 50 | 101 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 14.73 | 52 | 103 | IPR017884 | SANT domain |
SMART | SM00717 | 3.1E-6 | 53 | 101 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.00E-6 | 56 | 99 | No hit | No description |
Pfam | PF00249 | 4.7E-6 | 56 | 98 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 740 aa Download sequence Send to blast |
MMTELQTTMT TSLDCGPNFL TLNCSLKDGI PGTCFSSIDH VETKHSAKKP TRQWAAWTRQ 60 EEESFFTALR QFGKNFEKIT LRVQSKNKDQ VRHYYYRLFR RMNKLLGPGI SLDSKNSKET 120 IAAMLRWWSL LEKYSCKASK LHLKPRRFKL FVEALEHQLV KDRKKSIKKR HSQGENCAPA 180 ASIPVGNQTR SLGTDSDTVK LVLIDSQNIQ KLGSGKVTSS SPRCNVSLGV NRGNTKGDTS 240 SVKMARQRKR PGSASATSYK RWEKAAIAGV SLVADAAEHL ERAGLRQDPE QELGTNSFDH 300 TGNLLPPLPH RQNAIHECNV QSSVKLKLQL FPIDEVTRRA LEMDKLNPFL ELTLSNRKKI 360 SSVLEHLTRK WGSSSVATGK LMLFPYIAKR ENLVSYQRWG QDSCVSVGDI NISIGNPAVF 420 RLRYGWVSPE TDCPSNQVCF SSDHAMNMTG QSHHASPDVQ NNHGMTSNPT ENSKLRTENV 480 HASAESLKVG STLAVSAGEW ADSLTNMSIG DLLTEVSDEI NDNAIEPPVS GNTEYYEQIP 540 FTCDSFDAAI AAHISKHHNK TSFPSAFTSQ SPSFFEAEDT CDAFSFRKKS NTFQDLSNIP 600 ETEAMQDGNL ACAVDSDYST KELCKVDNDA HSPQRLEVAK DFLEHHTIIE NAVVAKDING 660 LTDLYWPDSL GPLDLEIPTC RYHSTDLILS DSLGGLSGLI ASSLDAFQSC AFFGTEKKPG 720 SPAADESHKT ASFPRVQDY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015898496.1 | 0.0 | TSL-kinase interacting protein 1 isoform X1 | ||||
Refseq | XP_015898497.1 | 0.0 | TSL-kinase interacting protein 1 isoform X1 | ||||
Refseq | XP_024935419.1 | 0.0 | TSL-kinase interacting protein 1 isoform X1 | ||||
Swissprot | Q8LJT8 | 0.0 | TKI1_ARATH; TSL-kinase interacting protein 1 | ||||
TrEMBL | A0A067K275 | 0.0 | A0A067K275_JATCU; Uncharacterized protein | ||||
STRING | EOY07887 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36960.2 | 0.0 | TSL-kinase interacting protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0363s0006.1.p |