PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0362s0025.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 280aa    MW: 31012.7 Da    PI: 8.9581
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0362s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.81.1e-1618109187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                          +Wt++ + +L++a  ++  +l+rg+l++++W+ev++++     ++++  r+ +qCk++++ ++k+yk +k++++  +    s++p++d+l
  Kalax.0362s0025.1.p  18 CWTEEATSTLVDAWGKRYVELSRGNLRQKDWQEVADAVnarhgHSKKTFRTDVQCKNRIDTIKKKYKTEKARASASNGALASNWPFYDRL 107
                          8*************************************988877778889************************99888889*******9 PP

             trihelix  86 ea 87 
                          +a
  Kalax.0362s0025.1.p 108 DA 109
                          85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.6E-2616110No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDESSPPPSR PIPVREDCWT EEATSTLVDA WGKRYVELSR GNLRQKDWQE VADAVNARHG  60
HSKKTFRTDV QCKNRIDTIK KKYKTEKARA SASNGALASN WPFYDRLDAL IGPNVKKAVT  120
GGGGGGQVGT PPLPAIRKAG PHASTLPKKR GAAAASMDDS YFRRNYSAVA AAAAAADLDE  180
PEDEEERMED EESERSRSSG DEEGDGDGIK KLAKAIKRFG EIYARVEGEK QRQMVELEKQ  240
RMQFAKELEV QRMQMFMNTQ VQLEKIKRSK GSGSNDLYS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019419880.11e-112PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLA0A1S3VKN21e-109A0A1S3VKN2_VIGRR; trihelix transcription factor ASIL2 isoform X4
TrEMBLV7BTZ91e-109V7BTZ9_PHAVU; Uncharacterized protein
STRINGXP_007148047.11e-110(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-63sequence-specific DNA binding transcription factors