PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0361s0027.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 226aa MW: 25364.8 Da PI: 8.21 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.2 | 1.7e-19 | 74 | 127 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++++eq+ +Le F +++++ +++e+LA +lgL+ rqV vWFqNrRa++k Kalax.0361s0027.1.p 74 NKRKLSEEQVSVLEVNFGNEHKLECDRKERLAGELGLDPRQVAVWFQNRRARWK 127 56799************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 114 | 9.1e-37 | 74 | 164 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kr+ls+eqv++LE +F +e+kLe +rK++la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+a+d+l +n++L+++v +L+e l Kalax.0361s0027.1.p 74 NKRKLSEEQVSVLEVNFGNEHKLECDRKERLAGELGLDPRQVAVWFQNRRARWKAKKLEEEYSRLKAAHDTLLLHNSQLQSQVMKLEELL 163 79************************************************************************************9877 PP HD-ZIP_I/II 92 k 92 + Kalax.0361s0027.1.p 164 E 164 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.196 | 69 | 129 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.2E-17 | 71 | 133 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.69E-17 | 73 | 137 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.96E-16 | 73 | 130 | No hit | No description |
Pfam | PF00046 | 8.2E-17 | 74 | 127 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-20 | 75 | 136 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.5E-5 | 100 | 109 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 104 | 127 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.5E-5 | 109 | 125 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MISAVNNNNG SEVGDDHRLL ISQMYDSAGV VYEQIMETTG KQEAAGVGGK KMRRKKRKQK 60 RKEAACSSEG GLKNKRKLSE EQVSVLEVNF GNEHKLECDR KERLAGELGL DPRQVAVWFQ 120 NRRARWKAKK LEEEYSRLKA AHDTLLLHNS QLQSQVMKLE ELLEKQARMR LCSEGNSPTS 180 SGSVGAAPFL GLGGFGIIEE CLPNEFYTAH QNCAMEMEWP TLYDM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 52 | 60 | RRKKRKQKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023003086.1 | 8e-55 | homeobox-leucine zipper protein ATHB-40-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66700.1 | 4e-44 | homeobox 53 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0361s0027.1.p |