PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0352s0037.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

DBB

Protein Properties

Length: 325aa MW: 35635.9 Da PI: 8.1895

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0352s0037.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	16.4	1.9e-05	29	68	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Htv 39 + C +++ ++lfC+ + ++C +C ++H H + Kalax.0352s0037.1.p 29 KLCHSCNSAAAKLFCRRHSAFFCLNCDANIHLFtsasHLR 68 57*****************************544455655 PP
2	zf-B_box	22.2	2.9e-07	70	114	4	42
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42 + C+ +e ++ C+ + lC+ C + +H + H++vp+ Kalax.0352s0037.1.p 70 PACDVCECAPAAVTCKADAASLCAVCDQDIH-SvnplsrrHERVPI 114 78*****************************.44888888999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.869	26	71	IPR000315	B-box-type zinc finger
SMART	SM00336	0.083	26	63	IPR000315	B-box-type zinc finger
CDD	cd00021	3.54E-4	30	70	No hit	No description
PROSITE profile	PS50119	10.196	67	114	IPR000315	B-box-type zinc finger
SMART	SM00336	9.2E-13	67	114	IPR000315	B-box-type zinc finger
CDD	cd00021	8.97E-7	70	114	No hit	No description
Pfam	PF00643	4.9E-6	70	114	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MQMAGEEEES YVHGVAVSWP IVPPRAASKL CHSCNSAAAK LFCRRHSAFF CLNCDANIHL 60 FTSASHLRVP ACDVCECAPA AVTCKADAAS LCAVCDQDIH SVNPLSRRHE RVPIALLQVH 120 QPAPNKSAPP APIVICGFDV SDFLVPMAEE EILWMNLNQN SKLALCPSEL KSEDVIFPDF 180 DPLDDFDLPD PVSYGDFKHE TISYSDSVVP TDHCYISTSS PIANFEALIP KLLLMHVQPP 240 AKSTHSPIHL TAAAILPKTF GFLRRARSRQ RSGRLGFCGT RRRGRIESLR RRSGTLRGRH 300 MRRPDPGSRA GSPSGAIRMS SRIF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24790.2	6e-33	CONSTANS-like 3

Link Out ? help Back to Top
Phytozome	Kalax.0352s0037.1.p