PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0345s0030.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 198aa    MW: 22543.6 Da    PI: 7.2856
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0345s0030.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.86.7e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krie+ks rqvtfskR+ g++KKA+ELSvLCd++va+ ifss+gk+yeyss
  Kalax.0345s0030.3.p  9 KRIEDKSSRQVTFSKRKSGLMKKANELSVLCDVDVALFIFSSKGKMYEYSS 59
                         79***********************************************96 PP
2K-box20.52e-08861511277
                K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqi 77 
                          +++++++ e a L   i+ ++  +R l     ++L++ eL qL q+Le+ l++ R kK++ + e+ 
  Kalax.0345s0030.3.p  86 ETEQKCHAEDAGLSGSINLMRLINRSLDPTTDNPLNVPELTQLDQHLEDLLRHTRFKKEQAMWESA 151
                          446778888888888889999777999989999****************************98864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.09161IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-38160IPR002100Transcription factor, MADS-box
CDDcd002656.03E-37273No hitNo description
SuperFamilySSF554556.28E-31283IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-28323IPR002100Transcription factor, MADS-box
PfamPF003193.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-283859IPR002100Transcription factor, MADS-box
PfamPF014868.5E-687155IPR002487Transcription factor, K-box
PROSITE profilePS512976.63388183IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGRGKVELKR IEDKSSRQVT FSKRKSGLMK KANELSVLCD VDVALFIFSS KGKMYEYSSG  60
SSLKRILEHH QSPFEAENAA RKHVLETEQK CHAEDAGLSG SINLMRLINR SLDPTTDNPL  120
NVPELTQLDQ HLEDLLRHTR FKKEQAMWES ALATVEEEGH SNQRLKHFQG DDEVRVLNEI  180
ESLNCANLKQ RIFCLHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-21187187MEF2 CHIMERA
6byy_B6e-21187187MEF2 CHIMERA
6byy_C6e-21187187MEF2 CHIMERA
6byy_D6e-21187187MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018815444.12e-44PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1
TrEMBLW0FFX14e-43W0FFX1_JUGRE; Flowering locus C-like protein
STRINGXP_009344924.15e-43(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.18e-36AGAMOUS-like 79