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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0337s0029.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | AP2 | ||||||||
Protein Properties | Length: 494aa MW: 53820.1 Da PI: 8.3098 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.1 | 3.8e-17 | 168 | 217 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Kalax.0337s0029.1.p 168 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 217 78*******************......55************************998 PP | |||||||
2 | AP2 | 42.1 | 2.2e-13 | 260 | 310 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+t+ eAa+a++ a+++ +g Kalax.0337s0029.1.p 260 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDTEVEAARAYDVAALRCNG 310 89********.7******...5...334336**********99**********99766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.8E-9 | 168 | 217 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-16 | 168 | 226 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.846 | 169 | 225 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-17 | 169 | 225 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.88E-12 | 169 | 227 | No hit | No description |
SMART | SM00380 | 6.1E-32 | 169 | 231 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.7E-9 | 260 | 310 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.05E-26 | 260 | 320 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-17 | 260 | 319 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 15.857 | 261 | 318 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-16 | 261 | 318 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-32 | 261 | 324 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-6 | 262 | 273 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-6 | 300 | 320 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 494 aa Download sequence Send to blast |
MWDLNAEMLT DDVPQAQRNV NHQTAERRAR AGRMMDDAGT STSSMIVNAA AAGDEDSNSS 60 NTARTFTFDI IMNSNTSPHH HLQDNIIASS SSLAAANARV FYSAAPNFGD GGVGSRSSSS 120 ATSPKSDWLN LSFADSAEQS EMRLLQQQQQ QQQMPVKKSR RGPRSRSSQY RGVTFYRRTG 180 RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGSDA DINFNIADYQ EDINQMKSLS 240 KEEFVHILRR QSTGFARGSS KYRGVTLHKC GRWEARMGQL LGKKYIYLGL FDTEVEAARA 300 YDVAALRCNG SEAATNFEPS TYEGDVASHP NNDASGHELD LSLTIDSSSD YNPKRNESSS 360 HDGNFKGGGP KLVYPTYATG GGQVPSAHSQ PSMPASYPPM SHGLAVHSGG YLPMSYEVME 420 RSVAAVASPR MPNWGWQHSQ GHGSTISRLP PFSSAASSGF SLSSSVTPAT SLASLQLQQP 480 HQSSCYQNNY RKS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002312046.1 | 1e-126 | floral homeotic protein APETALA 2 isoform X1 | ||||
Refseq | XP_024463449.1 | 1e-126 | floral homeotic protein APETALA 2 isoform X2 | ||||
Swissprot | B8AMA9 | 2e-97 | AP22_ORYSI; APETALA2-like protein 2 | ||||
TrEMBL | A0A2K1ZBQ1 | 1e-125 | A0A2K1ZBQ1_POPTR; Uncharacterized protein | ||||
TrEMBL | B9HLZ7 | 1e-125 | B9HLZ7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s04490.1 | 1e-125 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 4e-89 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0337s0029.1.p |