PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0335s0046.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Dof
Protein Properties Length: 385aa    MW: 41577.4 Da    PI: 8.4196
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0335s0046.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.56.8e-3992152262
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                          +e  lkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk++ 
  Kalax.0335s0046.1.p  92 PEPGLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTHGGALRNVPVGGGCRRNKRTG 152
                          56789*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-3776150IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.71196150IPR003851Zinc finger, Dof-type
PfamPF027019.1E-3396150IPR003851Zinc finger, Dof-type
PROSITE patternPS01361098134IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MVFSSVPLYL DPHNWHVQQQ AQLHHHHQQR QQQNQHLIHG GGDNTHPNHQ IGVQMPPPPP  60
TASQTAGGGV GSSSIRPGSM ADRARQANIP QPEPGLKCPR CESTNTKFCY FNNYSLSQPR  120
HFCKTCRRYW THGGALRNVP VGGGCRRNKR TGNKTTGAAE SKPVNGEQDN NLNNNNNNNG  180
SISPVISSTM LEDSSSLHQP RLAQIPFLAS LQGLAGHYGS PPSSLGLSFS SMMSAAAAQD  240
ELGFQIGGNS NSNNSNGSGS DHQWRPHRFP NFLAGFDPPQ QIPHSSLFQF PVDHSHQSTH  300
PPLRSSVSQQ PARPPDNPAT DHHQQSDEAG AKAEAAAAGQ QGGMNTNLVS RSFLGTSDHN  360
NNQYWNNSPW TDMSGLNSST TSLL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00295DAPTransfer from AT2G37590Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.14e-46DNA binding with one finger 2.4