PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0335s0005.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 233aa MW: 25734.6 Da PI: 10.7246

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0335s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.9	7.5e-13	37	85	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++h+e+E rRR+riN+ + +Lr +lP+ + K +Ka+ L ++v+++k+Lq Kalax.0335s0005.1.p 37 KKSHSEAESRRRKRINDHLTTLRGILPSkL------KTDKATLLMETVQHVKELQ 85 789***********************66......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.70E-10	33	87	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.9E-13	35	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.596	35	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-12	36	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-10	37	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-7	41	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	4.9E-6	131	187	No hit	No description
CDD	cd04873	0.00872	132	195	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MDKFVFPQRA SSFMAAPMTT AMMMATRFAT NKPKAEKKSH SEAESRRRKR INDHLTTLRG 60 ILPSKLKTDK ATLLMETVQH VKELQQKFAE VAGSGGEGGM KPLLPTETDT VSVSRCQDEE 120 VGEKNNLFVK ATVCCEDRPD LNRDLVQLVR SVQGKITRAE MASVGGRTKM VVTLKLTGGG 180 GEEEVRRVRR GLLAVVENRA SGRIGHSKRG RFVMPNRTDG YGGMSNYNYS LR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010107684.1	9e-55	transcription factor bHLH30
TrEMBL	W9RXF4	2e-53	W9RXF4_9ROSA; Uncharacterized protein
STRING	XP_010107684.1	3e-54	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56770.1	1e-31	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0335s0005.1.p