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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0331s0018.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB_related | ||||||||
Protein Properties | Length: 361aa MW: 39289.9 Da PI: 7.9686 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.1 | 4.1e-13 | 120 | 164 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++lG+g+W+ Iar +Rt+ q+ s+ qky Kalax.0331s0018.1.p 120 PWTEEEHRLFLIGLHKLGKGDWRGIARNYVITRTPTQVASHAQKY 164 8*****************************89************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.434 | 113 | 169 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.2E-16 | 115 | 170 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.4E-17 | 116 | 168 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.4E-10 | 117 | 167 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-10 | 117 | 163 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.44E-9 | 120 | 165 | No hit | No description |
Pfam | PF00249 | 9.6E-12 | 120 | 164 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MTRRCSHCSF DGHNSRTCPS RAASSSSSAA ISGSASCGGG GVKLFGVRLT DGSIMKKSAS 60 MGNLSSLAHY NSSPSTAAAS PNHSSPSSDT IGNALPAPDG CLSDDPAHVN RRSDRKKGTP 120 WTEEEHRLFL IGLHKLGKGD WRGIARNYVI TRTPTQVASH AQKYFIRQSN ASRRKRRTSL 180 FDMTPEMETE MPPAPERFLL PPPTSEIDHE NSISLTNQNP ELHSMELTPE ETVKESDDTS 240 IEANYFLPAP VVPTFYPAYV PVPFRFWSPN LAPTEEEYPE TSNHQVLKPI PVIPKDPINV 300 DDLVGMSQLS IKETVKSRAD SHPLSMRLLG SPSRQSAFRP RRSASVPNLT QGNADSNPGE 360 * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021889228.1 | 1e-128 | transcription factor MYBS3 | ||||
TrEMBL | A0A2I4G5G4 | 1e-127 | A0A2I4G5G4_JUGRE; uncharacterized protein LOC109004890 | ||||
STRING | evm.model.supercontig_2092.1 | 1e-128 | (Carica papaya) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 9e-76 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0331s0018.1.p |