PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0331s0017.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 835aa MW: 92354.2 Da PI: 6.8264 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.4 | 5.8e-19 | 17 | 75 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Kalax.0331s0017.1.p 17 KYVRYTPEQVEALERLYHECPKPSSIRRQQLVRECpilfNIEPKQIKVWFQNRRCREKQ 75 5679*****************************************************97 PP | |||||||
2 | START | 161.2 | 7.9e-51 | 161 | 369 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 +aee+++e+++ka+ ++ Wv+++ ++g++++ +++ s+++ g a+ra+g+v +++++ve l d++ W ++++++++++v+ ++ g Kalax.0331s0017.1.p 161 IAEETLTEFLSKATGTAVEWVQMPGVKPGPDSIGIIAISHGCIGVAARACGLVSLEPTRVVEVLKDRP-SWFRDCRAVDVVNVLPTAngG 249 789*******************************************************7777777777.****************9999* PP EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS START 90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175 +++l +++l+a+++l+p Rdf+ Ry+ +++g++v++++S+ ++++ p+ +s+vRae l Sg+li+p+++g+s +++v+hvdl+ Kalax.0331s0017.1.p 250 TIELLYMQLYAPTTLAPaRDFWLMRYTSVMEDGSLVVCERSLKHTKNGPSvptVQSFVRAEILSSGYLIRPCDGGGSIIHIVDHVDLEPL 339 ************************************************9999899*********************************** PP XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 176 lphwllrslvksglaegaktwvatlqrqce 205 +++++lr+l++s ++ ++k+++a+l+++++ Kalax.0331s0017.1.p 340 SVPEVLRPLYESPTILAQKMTMAALRQLRQ 369 *************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-18 | 7 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.629 | 12 | 76 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.7E-16 | 14 | 80 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.51E-17 | 16 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.70E-17 | 17 | 77 | No hit | No description |
Pfam | PF00046 | 1.5E-16 | 18 | 75 | IPR001356 | Homeobox domain |
CDD | cd14686 | 1.36E-5 | 69 | 108 | No hit | No description |
PROSITE profile | PS50848 | 24.628 | 151 | 351 | IPR002913 | START domain |
CDD | cd08875 | 6.43E-71 | 155 | 369 | No hit | No description |
SMART | SM00234 | 1.5E-36 | 160 | 370 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.5E-20 | 160 | 366 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 7.42E-36 | 160 | 370 | No hit | No description |
Pfam | PF01852 | 1.9E-48 | 161 | 369 | IPR002913 | START domain |
Pfam | PF08670 | 1.1E-49 | 691 | 833 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 835 aa Download sequence Send to blast |
MMSMSCKDSK HVMDNGKYVR YTPEQVEALE RLYHECPKPS SIRRQQLVRE CPILFNIEPK 60 QIKVWFQNRR CREKQRKEAS RLQAVNRKLN AMNKLLIEEN DRLQKQVSQL VCENGYFRQR 120 NQNPKSATKD TSCESVVTNG QHQLVLQNPP RDASPAGLLS IAEETLTEFL SKATGTAVEW 180 VQMPGVKPGP DSIGIIAISH GCIGVAARAC GLVSLEPTRV VEVLKDRPSW FRDCRAVDVV 240 NVLPTANGGT IELLYMQLYA PTTLAPARDF WLMRYTSVME DGSLVVCERS LKHTKNGPSV 300 PTVQSFVRAE ILSSGYLIRP CDGGGSIIHI VDHVDLEPLS VPEVLRPLYE SPTILAQKMT 360 MAALRQLRQM AYEVSPPNAT NWSRKPAALH ALSNRLSRGF NEALNGFSDE GWIAMGNDGM 420 DDVAILVNSS PNKLMGLNLS FGNGFSPVCN AVLCAKASML LQNVPPAILL RFLREHRSEW 480 ADNNIDAYSA AAIKAGPCNL PGIRVGGFGG QVILPLAHTI EHEELLEVIK LECVGHCPED 540 AMMPRDMFLL QMCSGVDEHA VGTCSELIFA PIDASFTDDT PLLPSGFRII PLESVRDSSS 600 PNRTLDLASA LETGTRTSND CSLKSRSTRS VMSIAFQFAC ESHMQESVAS MARDYVRSII 660 SSVQRVALAL SPNLSSNGLL RSPSQTPEAK TLSRWICTSY RYSLGVELLK ASSKSNESML 720 ETLWHHSDAI MCCSLKALPV FTFANQAGLD MLETTTIALQ EMTLDKIFDE QGRRTLCSEL 780 PQIMQQGFSW LPGGICVSIM GRPISYDRAV AWKVLNDEDN AHCICFMFLN WSFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002284003.2 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-15 | ||||
Swissprot | Q9ZU11 | 0.0 | ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15 | ||||
TrEMBL | A0A2R6R006 | 0.0 | A0A2R6R006_ACTCH; Homeobox-leucine zipper protein like | ||||
STRING | cassava4.1_001674m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52150.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0331s0017.1.p |
Publications ? help Back to Top | |||
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