PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0330s0028.3.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 381aa MW: 41348.7 Da PI: 6.6067

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0330s0028.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.1	6.4e-13	320	365	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k + +++L +Av+YIk+Lq Kalax.0330s0028.3.p 320 SIAERVRRTKISERMRRLQELVPNM----DKQTNTSDMLDMAVDYIKDLQ 365 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.027	314	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-16	317	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.21E-12	318	369	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.6E-15	319	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.9E-13	320	370	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.0E-10	320	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MDADLHQARQ FNPVVVGGGG GGSGGLTRYR SAPSSYFSNF GMEYKDVSDF LRPPPPKPLS 60 PQIDRIFAQL ASEIPGDHTL EVEAAITTPV MKLEIEPELP PAAPVMMASY TPSAGLPPPH 120 PLSRTSSGVN TSSHRGLKSS AAQPVRIPVV EKPSSGSNIA RHNSLPAGLF SQIDVHNVAA 180 TYFGTGSNQA NSSSDLMSAY SGIGNDNMKP EEDDDYMLNG FWNDSSSTEK LLTGVKRERA 240 EDEFLSGGAL EDIKPFSKDS NIPQAAGEMK KSGLLSHHLS LPKSSMEMLS AMEKFLDLQD 300 STTVPVGVRA KRGCATHPRS IAERVRRTKI SERMRRLQEL VPNMDKQTNT SDMLDMAVDY 360 IKDLQQRVQI LQACRERCTC *

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MDADLHQARQ FNPVVVGGGG GGSGGLTRYR SAPSSYFSNF GMEYKDVSDF LRPPPPKPLS  60
PQIDRIFAQL ASEIPGDHTL EVEAAITTPV MKLEIEPELP PAAPVMMASY TPSAGLPPPH  120
PLSRTSSGVN TSSHRGLKSS AAQPVRIPVV EKPSSGSNIA RHNSLPAGLF SQIDVHNVAA  180
TYFGTGSNQA NSSSDLMSAY SGIGNDNMKP EEDDDYMLNG FWNDSSSTEK LLTGVKRERA  240
EDEFLSGGAL EDIKPFSKDS NIPQAAGEMK KSGLLSHHLS LPKSSMEMLS AMEKFLDLQD  300
STTVPVGVRA KRGCATHPRS IAERVRRTKI SERMRRLQEL VPNMDKQTNT SDMLDMAVDY  360
IKDLQQRVQI LQACRERCTC *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	4e-46	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0330s0028.3.p