PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 288aa MW: 32212.8 Da PI: 9.0806

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0329s0049.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23	1.8e-07	40	83	3	44
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +W++eE + + +a + + + +W ++a++++ g+t +++ + Kalax.0329s0049.1.p 40 KWSQEENKMFENALAVYDRDspdRWQKVAAMIP-GKTVGEVVKQY 83 8***************99*********.*99987765 PP
2	Myb_DNA-binding	44.8	2.9e-14	145	189	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky Kalax.0329s0049.1.p 145 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 189 8***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	8.316	36	91	IPR017884	SANT domain
SMART	SM00717	3.2E-7	37	89	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.29E-10	40	93	IPR009057	Homeodomain-like
CDD	cd00167	7.96E-7	40	86	No hit	No description
Pfam	PF00249	7.4E-6	40	83	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.486	138	194	IPR017930	Myb domain
SuperFamily	SSF46689	7.4E-17	139	193	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-17	141	193	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	3.1E-12	142	189	IPR009057	Homeodomain-like
SMART	SM00717	5.3E-13	142	192	IPR001005	SANT/Myb domain
CDD	cd00167	2.36E-11	145	190	No hit	No description
Pfam	PF00249	1.0E-12	145	189	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MKFEMEIRSP GYGYPENNQQ QNSRQHRKQH HQQQAESLSK WSQEENKMFE NALAVYDRDS 60 PDRWQKVAAM IPGKTVGEVV KQYEALEADV SSIEAGLVPV PGYACPAFTL DWVGGDGKSY 120 DGFSQGYGGG KRLRGVEQER KKGVPWTEEE HKLFLLGLKK YGKGDWRNIS RNFVITRTPT 180 QVASHAQKYF IRQLSGGKDK RRASIHDITT VNLSESQTPL SPDQLARGQH SPEMPFQWGG 240 SQSSSGHGSS MDFNGVYGFS SNRSAQGMLG SYMDAYQMQS ATQYPQV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	2e-16	41	103	11	73	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK362184	1e-42	AK362184.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2003C15.
GenBank	AK363192	1e-42	AK363192.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013G01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021278855.1	1e-110	transcription factor DIVARICATA
Swissprot	Q8S9H7	1e-100	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A0D2TGI1	1e-107	A0A0D2TGI1_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8JLE1	1e-107	A0A1U8JLE1_GOSHI; transcription factor DIVARICATA-like
STRING	Gorai.009G093700.1	1e-108	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	3e-83	MYB family protein

Link Out ? help Back to Top
Phytozome	Kalax.0329s0049.1.p

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]