PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0323s0003.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 531aa    MW: 57732.7 Da    PI: 7.499
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0323s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.23.8e-17150236186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W++  + +L+ea+ ++  +l++g+l++ +Weev+  +re+     +s +qCk+k +nl+kryk ++++++++   s+s++p+f+++e
  Kalax.0323s0003.1.p 150 EWSDTAIGCLLEAYMSKYAQLNKGNLRGRDWEEVAGMVREGCQkqAKSVEQCKNKVDNLKKRYKLERHRMSSG-GVSTSHWPWFKKME 236
                          5**********************************998765442256999**********************9.667779*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.6E-19148238No hitNo description
SMARTSM005950.0016158243IPR006578MADF domain
Gene3DG3DSA:3.40.1160.101.4E-64273523IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B31.53288524IPR015963Uridylate kinase, bacteria
SuperFamilySSF536331.26E-49289523IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042547.39E-94291524No hitNo description
PfamPF006968.4E-19292503IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MASCDDDFPL LPDDRHHHHQ QQQQSHPQFQ QQGFYRLNRF INKVATAPTA RSPIRGGRDE  60
GSERFADLSF TAKCASAFPD VAPFSGDEEA SPYAGEAGEE EEAANQSSGR KEREEVSDGT  120
ALYKRSKIGE GSGSGSAAPG GGDYRRDREE WSDTAIGCLL EAYMSKYAQL NKGNLRGRDW  180
EEVAGMVREG CQKQAKSVEQ CKNKVDNLKK RYKLERHRMS SGGVSTSHWP WFKKMEEIFG  240
DLVPRNTADL EEDKAVQSSS RQAKRYSVAT ANPVSPLLNV RMKQAPRLRW RRVVFKISGV  300
ALAGTGSGSN NFDPEVATLI ASEVAKASRA GVEVAIVVGG RNLFCGDTWV TATGSDRSTA  360
YQIGMMATVM NSILLQSAME KMGIQARVQS GLIVQESAEP YNRQRAIRHL EKGRIVIFGG  420
VGVGIGNPLF STDTAAALRA SEIHAEAVLK GANADGLYGC NSGNNNIFEH ISFRALGSRG  480
ANFMDMMALS YCEENSIPVV VFNLLEPGNI SKAICGEQVG TLIDQTGRIS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A5e-5329052350279Uridylate kinase
3nwy_B5e-5329052350279Uridylate kinase
3nwy_C5e-5329052350279Uridylate kinase
3nwy_D5e-5329052350279Uridylate kinase
3nwy_E5e-5329052350279Uridylate kinase
3nwy_F5e-5329052350279Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277826.10.0PREDICTED: uncharacterized protein LOC100264768 isoform X2
TrEMBLF6HKF70.0F6HKF7_VITVI; Uncharacterized protein
STRINGVIT_08s0007g04160.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-177Trihelix family protein