PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Kalax.0322s0035.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

LBD

Protein Properties

Length: 178aa MW: 19142.8 Da PI: 8.7723

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0322s0035.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.3	4e-41	19	118	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca++C+++pyf ++p+kf +vhk+FGasnv+kll ++pe +r da++slvyeA++r+rdPvyG++g i +lqqql++l Kalax.0322s0035.1.p 19 PCAACKLLRRRCAEECPFSPYFSPHEPHKFLAVHKVFGASNVSKLLLEVPEGQRADAANSLVYEANVRLRDPVYGCMGAIAALQQQLHSL 108 7*************************************************************************************** PP DUF260 91 kaelallkee 100 +a+l+++++e Kalax.0322s0035.1.p 109 QAQLDAVRSE 118 ***99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.492	18	119	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.4E-41	19	116	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MEKRVHLLGP AVALNKVTPC AACKLLRRRC AEECPFSPYF SPHEPHKFLA VHKVFGASNV 60 SKLLLEVPEG QRADAANSLV YEANVRLRDP VYGCMGAIAA LQQQLHSLQA QLDAVRSEIL 120 KHDIIRSQAA AAAPSSSAPT VTITTNNSST ITVAAAGADS SNNNISISTH HHHHLIRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-44	19	122	11	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-44	19	122	11	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014504141.1	3e-72	LOB domain-containing protein 13 isoform X1
Refseq	XP_017429810.1	3e-72	PREDICTED: LOB domain-containing protein 13 isoform X2
Refseq	XP_022637780.1	2e-72	LOB domain-containing protein 13 isoform X2
Refseq	XP_022637781.1	2e-72	LOB domain-containing protein 13 isoform X2
Swissprot	Q9AT61	4e-65	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A2P5AHJ8	3e-71	A0A2P5AHJ8_TREOI; Wilm's tumor protein
STRING	Gorai.003G151800.1	3e-71	(Gossypium raimondii)
STRING	XP_007142059.1	5e-71	(Phaseolus vulgaris)
STRING	cassava4.1_029925m	3e-71	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	4e-58	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	Kalax.0322s0035.1.p

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]