PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0321s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 475aa    MW: 51926.2 Da    PI: 6.3096
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0321s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000235976219
                         EETTTTEEESSHHHHHHH CS
              zf-C2H2  2 kCpdCgksFsrksnLkrH 19
                         +C++Cgk Fs++ ++  H
  Kalax.0321s0006.1.p 59 SCENCGKEFSSWKSFLEH 76
                         6**************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003552005878IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.11E-8194217No hitNo description
SMARTSM003550.13195217IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076195222IPR007087Zinc finger, C2H2
PfamPF139121.4E-9195219IPR007087Zinc finger, C2H2
PROSITE patternPS000280197217IPR007087Zinc finger, C2H2
SuperFamilySSF576677.11E-8290317No hitNo description
PfamPF139122.5E-13294318IPR007087Zinc finger, C2H2
SMARTSM003550.44295317IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.369295317IPR007087Zinc finger, C2H2
PROSITE patternPS000280297317IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MRAHGIGDES GLMDDDEDED QISDWEDKLA ETSNPASPPV NKRMYSLRTN PNRLKTCRSC  60
ENCGKEFSSW KSFLEHGKCG GESEDDAESP VSSPESESGA RRGMGWSKRK SSLRANFGNF  120
NSSCPSSEEE DLAHCLMMLS SATVDHSYQA EPDHESCASA SKDDQLNHSM MRSFVAPNRI  180
SIGIKAKSIA TKGLFECKAC KKVFNSHQAL GGHRASHKKV KGCFAARLDD NHRPPPADEE  240
TMLNNNSEDD EQQFTGIPVS KVNTSYSLQL ATNSSSVTAA HHFAPSSSKR KSKVHECSIC  300
HRVFSSGQAL GGHKRCHWIT SNNGGQDPTL LSKFAHFDHH LASKLAQTGP IDLNLPATSD  360
MNHRREADKQ QPVTRNALSF ELSAENYFLQ INELKGNDEV MMMITSNQKN NNNQCHNNNV  420
EEDDADSKVR LAKLSELKDM KVGGEGSSSS WLQVGLASST TDNVVAIGDD NTAG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002511650.11e-143zinc finger protein ZAT1
TrEMBLB9RD611e-142B9RD61_RICCO; Uncharacterized protein
STRINGXP_002511650.11e-143(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.15e-27C2H2-like zinc finger protein