PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0304s0024.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 838aa MW: 92383.2 Da PI: 6.7641 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.4 | 1.2e-18 | 20 | 78 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Kalax.0304s0024.1.p 20 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78 5679*****************************************************97 PP | |||||||
2 | START | 166.1 | 2.5e-52 | 164 | 371 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 +aee+++e+++ka+ ++ Wv+++ ++g++++ +++ s+++ g a+ra+g+v +++++ve+l d++ W +++++++++ v+ ++ g Kalax.0304s0024.1.p 164 IAEETLTEFISKATGTAIEWVQMPGVKPGPDSIGIIAISHGCAGVAARACGLVNLEPTRVVEILKDRP-SWFRDCRAVDVVSVLPTAngG 252 789*******************************************************9998888888.****************9999* PP EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS START 90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175 +++l +++l+a+++l+p Rdf+ +Ry+ +++g++v++++S+ ++q+ p+ +s+vRae+l Sg+li+p+++g+s +++v+hvdl+ r Kalax.0304s0024.1.p 253 TIELLYMQLYAPTTLAPaRDFWLIRYTSVMEDGSLVVCERSLKHTQNGPSmptVQSFVRAEMLSSGYLIRPCEGGGSIIHIVDHVDLEPR 342 *************************************************999889*********************************** PP XXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 176 lphwllrslvksglaegaktwvatlqrqc 204 ++++lr+l++s ++ ++kt++a+l++++ Kalax.0304s0024.1.p 343 RVPEVLRPLYESPTILAQKTTMAALRQLR 371 *************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.597 | 15 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-15 | 17 | 83 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.11E-17 | 19 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.29E-17 | 20 | 80 | No hit | No description |
Pfam | PF00046 | 2.9E-16 | 21 | 78 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-18 | 22 | 78 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.31E-5 | 72 | 111 | No hit | No description |
PROSITE profile | PS50848 | 25.633 | 154 | 354 | IPR002913 | START domain |
CDD | cd08875 | 3.98E-74 | 158 | 374 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.4E-21 | 162 | 369 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.79E-35 | 163 | 373 | No hit | No description |
SMART | SM00234 | 1.7E-36 | 163 | 373 | IPR002913 | START domain |
Pfam | PF01852 | 7.9E-50 | 164 | 371 | IPR002913 | START domain |
Pfam | PF08670 | 7.4E-53 | 694 | 836 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 838 aa Download sequence Send to blast |
MPEMMSMSCK DGKHGVDNGK YVRYTPEQVE ALERLYHECP KPSSIRRQQL IRECPILSNI 60 EPKQIKVWFQ NRRCREKQRK EASRLQAVNR KLNALNKLLM EENDRLQKQV SQLVSENGYF 120 RQNNQKKKLA TKDTSCESVV TSGQHQLMPQ HPPRDASPAG LLSIAEETLT EFISKATGTA 180 IEWVQMPGVK PGPDSIGIIA ISHGCAGVAA RACGLVNLEP TRVVEILKDR PSWFRDCRAV 240 DVVSVLPTAN GGTIELLYMQ LYAPTTLAPA RDFWLIRYTS VMEDGSLVVC ERSLKHTQNG 300 PSMPTVQSFV RAEMLSSGYL IRPCEGGGSI IHIVDHVDLE PRRVPEVLRP LYESPTILAQ 360 KTTMAALRQL RQLAYEVSPP NATNWARRPA ALRALSHRLS RGFNEALNGF SDEGWIVMGN 420 DGMDDVTVLI NSSPNKLMGL NLSFGNGFSP VCNTVLCAKA SMLLQNVPPA ILLRFLREHR 480 SEWADNNIDA YSAAAIKVGP CNLPGIRVGG FGGQVILPLA HTIEHEELLE VIKLESVGHC 540 SEDAIMPRDM FLLQMCSGVD EHAVGTCSEL IFAPIDASFA DDAPLLPSGF RIIPLEPVKE 600 ASSPNRTLDL ASALETGTRT SNDCSSNYGS TRSVMTIAFE FACESHMQES VAAMARQYVR 660 SIISSVQRVA LALSPNLSST GSLLSPSRTP EAQTLTRWIC ASYRCSLGVE LLKASSESNE 720 SMLKTMWQHS DAIMCCSLKA MPVFTFANQA GLDMLETTLA ALQDMTLEKI FDEHGRKTLC 780 SELPQIMQQG FACLQGGICV SSMGRPVSYE RAVAWKVLND EDNAHCICLM FVNWSFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021610318.1 | 0.0 | homeobox-leucine zipper protein ATHB-15 | ||||
Swissprot | Q9ZU11 | 0.0 | ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15 | ||||
TrEMBL | A0A2R6R006 | 0.0 | A0A2R6R006_ACTCH; Homeobox-leucine zipper protein like | ||||
STRING | cassava4.1_001674m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52150.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0304s0024.1.p |
Publications ? help Back to Top | |||
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