PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0298s0055.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 532aa    MW: 58512.8 Da    PI: 8.2974
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0298s0055.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000267393323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         C+ C+k F r  nL+ H r H
  Kalax.0298s0055.1.p 73 CEVCNKGFQRDQNLQLHRRGH 93
                         *******************88 PP
2zf-C2H210.70.0017148170123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  ks+ k H + +
  Kalax.0298s0055.1.p 148 WKCDKCSKNYAVKSDWKAHSKIC 170
                          58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.92E-77093No hitNo description
Gene3DG3DSA:3.30.160.601.6E-57093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8457193IPR007087Zinc finger, C2H2
SMARTSM003550.137193IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM00355110113143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-4136169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.92E-7143168No hitNo description
SMARTSM00355220148168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MMSQGLSPVP SSILGFVGDR SKNPDSSNSP ATQPSASSST LKRKRSLPGT PDPDSEVIAL  60
SPTSLMATNR FLCEVCNKGF QRDQNLQLHR RGHNLPWKLK QRSNKEVVKK KVYICPEKSC  120
VHHDPSRALG DLTGIKKHFS RKHGEKKWKC DKCSKNYAVK SDWKAHSKIC GTREYKCDCG  180
TLFSRKDSFI THRAFCAAVI DQSSSRFAPS VSATINPLSL RNDFLSGNSV QTHQLSDGGF  240
YPELSSSFHS YGHVNSNNVD GSKSIRHPQW LDHHHHPLNA SAHFLMGNPA ANLSHELLLQ  300
NAGQGNLFGS SSSSSQAPWL MNKSPDQSAF VNDSMSSLDQ ILGNASGGGV MRVKREDEIL  360
GNDNIVDNMP SLYNPTTINQ QQQQQGVTSN QSADQFLSSF FGRHNSNSLG FMSSGLSNEQ  420
LFTDNNNGFA DNSSFSRPPP AIKDSHDTAN LNHLMLMHES AAAVFKQEIT RPNTKHQEES  480
SQTRDFLGVG GNEMISREEQ FQLAASASEQ FGSSSSAAEL DVSHYNQEWK H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-29144204363Zinc finger protein JACKDAW
5b3h_F2e-29144204363Zinc finger protein JACKDAW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021683823.11e-125protein indeterminate-domain 9-like
TrEMBLA0A1J0HTI51e-126A0A1J0HTI5_9ROSI; C2H2-type zinc finger protein
STRINGcassava4.1_005556m1e-121(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-107C2H2-like zinc finger protein