PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0297s0026.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 385aa    MW: 42130.5 Da    PI: 9.4974
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0297s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.86.1e-11317362655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++Ik Lq
  Kalax.0297s0026.1.p 317 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 362
                          689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.151311361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-14314373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-10315366No hitNo description
Gene3DG3DSA:4.10.280.101.2E-13316374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-8317362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-13317367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MTVNINPSPL SSFSFLSFFR HKTRSRSSCS ESLGFSLMFP SSSESNSSSS YSQPSMAARA  60
LNRNASVPAD SLHADDDNNN HHRHHDFSPF LSPPHFNLQP PPYHQYFSAD SPSNCKVNNL  120
NHHPPSESKR LQRSGSGSND FSIAANLKIG AASSSPPLAR RSSSPAGFVA SDSGGFSVPR  180
GSSNYSRGNS SNGPGTSRLK PPLSSTRQDS NMSQLSGIAE NIIEGLNHSN GHRETHNYAY  240
ANDAWDNGAS ITFSGPPSKR NKNEEEYLNS FTGLEHQFSL PQTTLEMATV EKLLQIPEDS  300
VPCKIRAKRG YATHPRSIAE RERRTRISGK LKKLQDLVPN MDKQTSYADM LDLAVQHIKG  360
LQNQVQKLNK DMENCTCGCK RSTS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023925304.11e-105transcription factor bHLH128-like
SwissprotQ8H1021e-68BH128_ARATH; Transcription factor bHLH128
TrEMBLF6I3R91e-102F6I3R9_VITVI; Uncharacterized protein
STRINGVIT_05s0124g00240.t011e-103(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.22e-64bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]