PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Kalax.0296s0031.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Nin-like

Protein Properties

Length: 965aa MW: 105037 Da PI: 6.653

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0296s0031.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.6	5.9e-29	590	640	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yFs+++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Kalax.0296s0031.1.p 590 EKTISLDVLQQYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 640 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.598	579	660	IPR003035	RWP-RK domain
Pfam	PF02042	1.8E-26	592	640	IPR003035	RWP-RK domain
SuperFamily	SSF54277	9.16E-20	864	954	No hit	No description
SMART	SM00666	1.3E-23	869	951	IPR000270	PB1 domain
PROSITE profile	PS51745	22.945	869	951	IPR000270	PB1 domain
CDD	cd06407	1.73E-32	870	950	No hit	No description
Pfam	PF00564	2.0E-19	870	950	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.5E-22	870	950	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 965 aa Download sequence Send to blast
MAEPDEGKLC SGFPFHQHRN KADGNHPMDL DLDLDSSWPL DHVSFLPNPI SPFFISSSDQ 60 PFSPLWAFSD ADDDTRPSSA AAAAALSSAF RLPDYPRLFA LKSGHTDTRN GAPTEIDEKK 120 RLHPLPPASS LCGLEPDVSC VIKEKMTQAL RYFKESTEQH VLAQVWAPVK NGGRYVLTTS 180 GQPFVLDPHS NGLNRYRMVS LMYMFSVDEE SDGELGLPGR VFRQKLPEWT PNVQYYSSRE 240 YSRLDHALHY NVQGTLALPV FDSSGQTCVG VVELILTSQK INYAPEVDKV CKALEAVNLK 300 SSNILDHPKP QICNKGRQKA LSEILEVLSV VCESLKLPLA QTWVPCRHRN VLADGGGLRK 360 SCSSFDGSCM GQVCMSASDV TFYVVDAHLW GFRDACAEHH LQRGQGVAGR AFLTQSSCFC 420 RDITQFSKTE YPLVHYARLF GVKSSFAICL CSSLTGNDEY ILEFFLPPSV IDAGDQQALL 480 NSLLETMKLH FCSLRVASGR NLGEDMIQII EGSADEKLLE SVLRSHSTSP PAPAPDATND 540 RETGNKVSSA KLVSEKTNGS NNAINTAAVG GDLVGNTVTN KPERKRGKTE KTISLDVLQQ 600 YFSGSLKDAA KSLGVCPTTM KRICRQHGIS RWPSRKINKV NRSLTKLKRV IESVQGSDSA 660 FGLSSLSPAS LPAAGCSISW AANTNGSDRP NSPGLRTTEL QGMRSELPEC KSPISDGKAG 720 NGVHSPGSKT FDHEGSAHEH IPKVSKTRSG SREGSAGSPT SHGSCQGSAH ETNVAQDYVK 780 SGAPITNLVM ANFMPDTRLS APVQEPFEGL MVADVGSSKD LRNLCPSIAD AHIEDRLPEC 840 SWTNPQIPIP ALEPTTAANP VSSRENSATL TIKATYKDDI IRFRFLSNSR IVELREEVAK 900 RLKLEVGTFD IKYLDEDQEL VLIVCDADLR ECLEVSRSSG SLMVRLSVHD ITTNLGSSCE 960 STGV*

Sequence ? help Back to Top

Protein Sequence Length: 965 aa Download sequence Send to blast

MAEPDEGKLC SGFPFHQHRN KADGNHPMDL DLDLDSSWPL DHVSFLPNPI SPFFISSSDQ  60
PFSPLWAFSD ADDDTRPSSA AAAAALSSAF RLPDYPRLFA LKSGHTDTRN GAPTEIDEKK  120
RLHPLPPASS LCGLEPDVSC VIKEKMTQAL RYFKESTEQH VLAQVWAPVK NGGRYVLTTS  180
GQPFVLDPHS NGLNRYRMVS LMYMFSVDEE SDGELGLPGR VFRQKLPEWT PNVQYYSSRE  240
YSRLDHALHY NVQGTLALPV FDSSGQTCVG VVELILTSQK INYAPEVDKV CKALEAVNLK  300
SSNILDHPKP QICNKGRQKA LSEILEVLSV VCESLKLPLA QTWVPCRHRN VLADGGGLRK  360
SCSSFDGSCM GQVCMSASDV TFYVVDAHLW GFRDACAEHH LQRGQGVAGR AFLTQSSCFC  420
RDITQFSKTE YPLVHYARLF GVKSSFAICL CSSLTGNDEY ILEFFLPPSV IDAGDQQALL  480
NSLLETMKLH FCSLRVASGR NLGEDMIQII EGSADEKLLE SVLRSHSTSP PAPAPDATND  540
RETGNKVSSA KLVSEKTNGS NNAINTAAVG GDLVGNTVTN KPERKRGKTE KTISLDVLQQ  600
YFSGSLKDAA KSLGVCPTTM KRICRQHGIS RWPSRKINKV NRSLTKLKRV IESVQGSDSA  660
FGLSSLSPAS LPAAGCSISW AANTNGSDRP NSPGLRTTEL QGMRSELPEC KSPISDGKAG  720
NGVHSPGSKT FDHEGSAHEH IPKVSKTRSG SREGSAGSPT SHGSCQGSAH ETNVAQDYVK  780
SGAPITNLVM ANFMPDTRLS APVQEPFEGL MVADVGSSKD LRNLCPSIAD AHIEDRLPEC  840
SWTNPQIPIP ALEPTTAANP VSSRENSATL TIKATYKDDI IRFRFLSNSR IVELREEVAK  900
RLKLEVGTFD IKYLDEDQEL VLIVCDADLR ECLEVSRSSG SLMVRLSVHD ITTNLGSSCE  960
STGV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017973247.1	0.0	PREDICTED: protein NLP6
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A061G5G4	0.0	A0A061G5G4_THECC; Transcription factor, putative
STRING	EOY25090	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Kalax.0296s0031.1.p

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]