PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Kalax.0292s0039.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 878aa MW: 96967.8 Da PI: 5.8255

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0292s0039.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.1	1e-20	144	199	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r +L+++lgL+ rq+k+WFqNrR+++k Kalax.0292s0039.2.p 144 KKRYHRHTAHQIQEMEAVFKECPHPDDKQRMRLSQELGLKPRQIKFWFQNRRTQMK 199 688999***********************************************998 PP
2	START	144	1.4e-45	345	576	2	206
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...................SCEEEEEEEECCSCHHHHHHHHHCCCG CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..................dsgealrasgvvdmvlallveellddk 69 la + ++elvk+ +++p+W + e +n e+ ++ea r+s vv+m++ +lv ++d Kalax.0292s0039.2.p 345 LAMSSMDELVKMCRVGQPLWCQCKetgrEVLNVHEYAN------MfpwtindrngvkqnlgelTRTEATRESSVVIMNSITLVDAFMDCT 428 677899****************55555555555555......444445599999**9*********************** PP GCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EE CS START 70 eqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRael 147 +W + +a tl+vi+sg g lqlm ae+ +lsplvp R+++f+Ry++q ++g+wv+vd +d+ q+ +s+++ ++ Kalax.0292s0039.2.p 429 -KWVDLFSsiiaRARTLQVITSGvsghanGSLQLMHAEYLFLSPLVPtRESYFLRYCQQnVEEGTWVVVDFPTDNFQNSFQSAHLPAYKR 517 .99888888888*******************************************99**************98899999999 PP SSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 148 lpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +pSg++i++++ng+s+vtwveh + +++ +h++++ +v++gla+ga +w+ lqrqce+ Kalax.0292s0039.2.p 518 RPSGCIIQDMPNGYSRVTWVEHCEIEDKPVHQIFNNIVSNGLAFGAERWLNVLQRQCER 576 *********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.99E-20	131	201	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-21	137	207	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.151	141	201	IPR001356	Homeobox domain
SMART	SM00389	3.2E-20	142	205	IPR001356	Homeobox domain
Pfam	PF00046	3.0E-18	144	199	IPR001356	Homeobox domain
CDD	cd00086	1.36E-19	144	202	No hit	No description
PROSITE pattern	PS00027	0	176	199	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	41.241	335	579	IPR002913	START domain
SuperFamily	SSF55961	2.88E-27	336	578	No hit	No description
CDD	cd08875	1.08E-108	339	575	No hit	No description
SMART	SM00234	2.2E-29	344	576	IPR002913	START domain
Pfam	PF01852	4.8E-37	345	576	IPR002913	START domain
SuperFamily	SSF55961	7.0E-20	612	772	No hit	No description
SuperFamily	SSF55961	7.0E-20	802	840	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 878 aa Download sequence Send to blast
MYGDCQVVLS SMGMNNNNAG SSSSSSNLNL TSMNMNMGMG MGMGMFSSDS AAANYFSSPP 60 SNNIQIGSSF NFMSPSTLLM PPLPFHSSYP PLNILTPEES DQLKGKLDEM ESGSGSDQIE 120 ALSANDALDT NNNTDQNQQP QPKKKRYHRH TAHQIQEMEA VFKECPHPDD KQRMRLSQEL 180 GLKPRQIKFW FQNRRTQMKA QHDRQDNVML RQENENLMNE NYRLQAALRN IVCPSCGGPA 240 MLGEVGFDEQ QLRIENARLK EELERVCNLA SNYSGRPVQA IGPPPTILAP SLDLEMGMYP 300 RHFQEPTMGN CSSMIMPQHL LPENNLHFNE GVMIMEEEKQ LAFELAMSSM DELVKMCRVG 360 QPLWCQCKET GREVLNVHEY ANMFPWTIND RNGVKQNLGE LTRTEATRES SVVIMNSITL 420 VDAFMDCTKW VDLFSSIIAR ARTLQVITSG VSGHANGSLQ LMHAEYLFLS PLVPTRESYF 480 LRYCQQNVEE GTWVVVDFPT DNFQNSFQSA HLPAYKRRPS GCIIQDMPNG YSRVTWVEHC 540 EIEDKPVHQI FNNIVSNGLA FGAERWLNVL QRQCERLASL MARNIPDLGV IPSPEARKNL 600 MKLAYRMIRT FCFNISTSNG QSWTALSDSS DDTIRITTRK VMEPGQPNGV ILSAVSTTWL 660 PHSHFQVFDL LRDEHKRAQI DVLSNGNSLH EVAHIANGSH PGNCISLLRI NVASNSSQNV 720 ELMLQESCID QSGCLIVHAN VDVDSIQLAM SGEDPSRIPL LPIGFIITPV DPTLSRTSPS 780 AHANKDANPA NSPNPETKSN PGGCLLTVGL QVLASSLPSV KLSLSSITAI NNHLCNMVHQ 840 IGLALGAGTV SNDAPLAVAS TSGEAAAGET KVTADQA*

Sequence ? help Back to Top

Protein Sequence Length: 878 aa Download sequence Send to blast

MYGDCQVVLS SMGMNNNNAG SSSSSSNLNL TSMNMNMGMG MGMGMFSSDS AAANYFSSPP  60
SNNIQIGSSF NFMSPSTLLM PPLPFHSSYP PLNILTPEES DQLKGKLDEM ESGSGSDQIE  120
ALSANDALDT NNNTDQNQQP QPKKKRYHRH TAHQIQEMEA VFKECPHPDD KQRMRLSQEL  180
GLKPRQIKFW FQNRRTQMKA QHDRQDNVML RQENENLMNE NYRLQAALRN IVCPSCGGPA  240
MLGEVGFDEQ QLRIENARLK EELERVCNLA SNYSGRPVQA IGPPPTILAP SLDLEMGMYP  300
RHFQEPTMGN CSSMIMPQHL LPENNLHFNE GVMIMEEEKQ LAFELAMSSM DELVKMCRVG  360
QPLWCQCKET GREVLNVHEY ANMFPWTIND RNGVKQNLGE LTRTEATRES SVVIMNSITL  420
VDAFMDCTKW VDLFSSIIAR ARTLQVITSG VSGHANGSLQ LMHAEYLFLS PLVPTRESYF  480
LRYCQQNVEE GTWVVVDFPT DNFQNSFQSA HLPAYKRRPS GCIIQDMPNG YSRVTWVEHC  540
EIEDKPVHQI FNNIVSNGLA FGAERWLNVL QRQCERLASL MARNIPDLGV IPSPEARKNL  600
MKLAYRMIRT FCFNISTSNG QSWTALSDSS DDTIRITTRK VMEPGQPNGV ILSAVSTTWL  660
PHSHFQVFDL LRDEHKRAQI DVLSNGNSLH EVAHIANGSH PGNCISLLRI NVASNSSQNV  720
ELMLQESCID QSGCLIVHAN VDVDSIQLAM SGEDPSRIPL LPIGFIITPV DPTLSRTSPS  780
AHANKDANPA NSPNPETKSN PGGCLLTVGL QVLASSLPSV KLSLSSITAI NNHLCNMVHQ  840
IGLALGAGTV SNDAPLAVAS TSGEAAAGET KVTADQA*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028083900.1	0.0	homeobox-leucine zipper protein ROC3
Refseq	XP_028083901.1	0.0	homeobox-leucine zipper protein ROC3
Refseq	XP_028083902.1	0.0	homeobox-leucine zipper protein ROC3
Swissprot	Q336P2	0.0	ROC3_ORYSJ; Homeobox-leucine zipper protein ROC3
TrEMBL	A0A2R6PND8	0.0	A0A2R6PND8_ACTCH; Homeobox-leucine zipper protein
STRING	VIT_02s0012g02030.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	0.0	homeobox-7

Link Out ? help Back to Top
Phytozome	Kalax.0292s0039.2.p

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]