PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0292s0039.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 879aa    MW: 97096 Da    PI: 5.9099
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0292s0039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.11e-20145200156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t++q++e+e++F+++++p+ ++r +L+++lgL+ rq+k+WFqNrR+++k
  Kalax.0292s0039.1.p 145 KKRYHRHTAHQIQEMEAVFKECPHPDDKQRMRLSQELGLKPRQIKFWFQNRRTQMK 200
                          688999***********************************************998 PP
2START1441.4e-453465772206
                          HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...................SCEEEEEEEECCSCHHHHHHHHHCCCG CS
                START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..................dsgealrasgvvdmvlallveellddk 69 
                          la + ++elvk+  +++p+W +      e +n  e+                            ++ea r+s vv+m++ +lv  ++d  
  Kalax.0292s0039.1.p 346 LAMSSMDELVKMCRVGQPLWCQCKetgrEVLNVHEYAN------MfpwtindrngvkqnlgelTRTEATRESSVVIMNSITLVDAFMDCT 429
                          677899******************55555555555555......444445599999******9*************************** PP

                          GCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EE CS
                START  70 eqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRael 147
                           +W   +     +a tl+vi+sg      g lqlm ae+ +lsplvp R+++f+Ry++q  ++g+wv+vd  +d+ q+  +s+++   ++
  Kalax.0292s0039.1.p 430 -KWVDLFSsiiaRARTLQVITSGvsghanGSLQLMHAEYLFLSPLVPtRESYFLRYCQQnVEEGTWVVVDFPTDNFQNSFQSAHLPAYKR 518
                          .99888888888***********************************************99*****************98899999999* PP

                          SSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 148 lpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          +pSg++i++++ng+s+vtwveh + +++ +h++++ +v++gla+ga +w+  lqrqce+
  Kalax.0292s0039.1.p 519 RPSGCIIQDMPNGYSRVTWVEHCEIEDKPVHQIFNNIVSNGLAFGAERWLNVLQRQCER 577
                          *********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-20132202IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-21138208IPR009057Homeodomain-like
PROSITE profilePS5007117.151142202IPR001356Homeobox domain
SMARTSM003893.2E-20143206IPR001356Homeobox domain
PfamPF000463.0E-18145200IPR001356Homeobox domain
CDDcd000861.49E-19145203No hitNo description
PROSITE patternPS000270177200IPR017970Homeobox, conserved site
PROSITE profilePS5084841.241336580IPR002913START domain
SuperFamilySSF559612.88E-27337579No hitNo description
CDDcd088751.01E-108340576No hitNo description
SMARTSM002342.2E-29345577IPR002913START domain
PfamPF018524.9E-37346577IPR002913START domain
SuperFamilySSF559617.0E-20613773No hitNo description
SuperFamilySSF559617.0E-20803841No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 879 aa     Download sequence    Send to blast
MYGDCQVVLS SMGMNNNNAG SSSSSSNLNL TSMNMNMGMG MGMGMFSSDS AAANYFSSPP  60
SNNIQIGSSF NFMSPSTLLM PPLPFHSSYP PLNILTPKEE SDQLKGKLDE MESGSGSDQI  120
EALSANDALD TNNNTDQNQQ PQPKKKRYHR HTAHQIQEME AVFKECPHPD DKQRMRLSQE  180
LGLKPRQIKF WFQNRRTQMK AQHDRQDNVM LRQENENLMN ENYRLQAALR NIVCPSCGGP  240
AMLGEVGFDE QQLRIENARL KEELERVCNL ASNYSGRPVQ AIGPPPTILA PSLDLEMGMY  300
PRHFQEPTMG NCSSMIMPQH LLPENNLHFN EGVMIMEEEK QLAFELAMSS MDELVKMCRV  360
GQPLWCQCKE TGREVLNVHE YANMFPWTIN DRNGVKQNLG ELTRTEATRE SSVVIMNSIT  420
LVDAFMDCTK WVDLFSSIIA RARTLQVITS GVSGHANGSL QLMHAEYLFL SPLVPTRESY  480
FLRYCQQNVE EGTWVVVDFP TDNFQNSFQS AHLPAYKRRP SGCIIQDMPN GYSRVTWVEH  540
CEIEDKPVHQ IFNNIVSNGL AFGAERWLNV LQRQCERLAS LMARNIPDLG VIPSPEARKN  600
LMKLAYRMIR TFCFNISTSN GQSWTALSDS SDDTIRITTR KVMEPGQPNG VILSAVSTTW  660
LPHSHFQVFD LLRDEHKRAQ IDVLSNGNSL HEVAHIANGS HPGNCISLLR INVASNSSQN  720
VELMLQESCI DQSGCLIVHA NVDVDSIQLA MSGEDPSRIP LLPIGFIITP VDPTLSRTSP  780
SAHANKDANP ANSPNPETKS NPGGCLLTVG LQVLASSLPS VKLSLSSITA INNHLCNMVH  840
QIGLALGAGT VSNDAPLAVA STSGEAAAGE TKVTADQA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028083900.10.0homeobox-leucine zipper protein ROC3
RefseqXP_028083901.10.0homeobox-leucine zipper protein ROC3
RefseqXP_028083902.10.0homeobox-leucine zipper protein ROC3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A2R6PND80.0A0A2R6PND8_ACTCH; Homeobox-leucine zipper protein
STRINGVIT_02s0012g02030.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7