PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0291s0026.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WOX
Protein Properties Length: 213aa    MW: 23737.9 Da    PI: 10.6433
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0291s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox634.3e-20665357
                         --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         +R+++t+eq+ +Leel+++  r+p+a+++++++ +l    +++ ++V++WFqN++a+e++
  Kalax.0291s0026.1.p  6 SRWCPTPEQVMILEELYKSgIRTPNAAQIQQITCHLsyhgKIEGKNVFYWFQNHKARERQ 65
                         8*****************99**************************************97 PP

2Wus_type_Homeobox120.47.6e-39466264
    Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                         +++RW+PtpeQ++iLeelyksG+rtPn+++iq+it +L+ +Gkie+kNVfyWFQN+kaRerqk
  Kalax.0291s0026.1.p  4 SSSRWCPTPEQVMILEELYKSGIRTPNAAQIQQITCHLSYHGKIEGKNVFYWFQNHKARERQK 66
                         689***********************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.977166IPR001356Homeobox domain
SMARTSM003892.5E-5370IPR001356Homeobox domain
SuperFamilySSF466892.22E-11469IPR009057Homeodomain-like
PfamPF000467.6E-18665IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-7665IPR009057Homeodomain-like
CDDcd000864.99E-4766No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MSSSSSRWCP TPEQVMILEE LYKSGIRTPN AAQIQQITCH LSYHGKIEGK NVFYWFQNHK  60
ARERQKLKRN KLGKQYCQAS PQMQLPSSSA SLQRSSATAS FGLHQAPFCT CTPSSSVGFL  120
KQEGEPARDN QMPKRRMNNH RRRSCGDGAG GKSMIRACDQ SWKQAKVNNA GSTHPTLCSS  180
NLQPLRTLQL FPVKATNLRQ ESGSFANNQF LT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-37WOX family protein