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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0290s0033.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GATA | ||||||||
Protein Properties | Length: 404aa MW: 44800.2 Da PI: 5.4383 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 41.8 | 1.5e-13 | 223 | 256 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C+tt+ p+WR+ p+g + +C CGl+ rk+g+ Kalax.0290s0033.1.p 223 CAHCNTTQAPMWRKTPSGAR-ICDFCGLRLRKRGM 256 ********************.***********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 15.512 | 217 | 270 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 4.9E-10 | 217 | 266 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.3E-13 | 218 | 267 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 4.32E-11 | 219 | 273 | No hit | No description |
CDD | cd00202 | 1.16E-9 | 222 | 265 | No hit | No description |
Pfam | PF00320 | 3.9E-10 | 223 | 255 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS51525 | 14.379 | 322 | 403 | IPR027353 | NET domain |
Pfam | PF17035 | 4.9E-15 | 332 | 393 | IPR027353 | NET domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MSVSPSSDGP KKEVPDYIGF FTHELEDLMS GADVSGDDFF PLLGFKSDTA GREMRGDDAN 60 ESREGGGGLK KSGSLFCDGL GGELSDYKKE KLKGLLKQSV SIFTQEVDQM VEVVLATCQL 120 QHRLRSKGTA SSSQGSASGN NERARSSEKM KRGKFTSPKT SDAPAPVRPP ANIESVEEER 180 SRAVRTGGTT GWTTGELSTQ GYLERPRKFR SMIDILSQNG QSCAHCNTTQ APMWRKTPSG 240 ARICDFCGLR LRKRGMQLSP QKKDQTITGS LQEADNKDEE VTDDLKFLLG NDRLQVEQTM 300 KKYADEISAS LGLLEQQLEG FLDNVTSKCR SMTFFEKQSL WSLIKDLPPE NFDRVVEIIK 360 RSRGLDQRDE NDILVDLEDT DNAVLWRLYY YAKAVENARN LVG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 4e-07 | GATA transcription factor 15 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0290s0033.1.p |