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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Kalax.0287s0027.2.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
| Family |
SRS |
| Protein Properties |
Length: 347aa MW: 35529.5 Da PI: 8.0707 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kalax.0287s0027.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 201.8 | 2e-62 | 120 | 279 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93
+++CqdCGnqakkdC+h+RCRtCCksrg+dC+thvkstWvpa++rrerq ++++ +++a+ + +a s k+ ++++a+s+t+ s+
Kalax.0287s0027.2.p 120 SSSTCQDCGNQAKKDCSHRRCRTCCKSRGYDCSTHVKSTWVPASRRRERQLLASSTGASSASMSLSAGSGVKKARLVSSNAATSHTSNSN 209
5689*********************************************98888888888877777777777777777777777777555 PP
DUF702 94 aeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
++++++et+s lP ++ ++a f+cv+v+s++dg++e+aYq+ v+igGhvfkG+LydqG e+
Kalax.0287s0027.2.p 210 -TPPRSFETTSchqdptfketLPGQILAPATFKCVKVTSINDGDDEFAYQAMVKIGGHVFKGFLYDQGEES 279
.56778888888899*****************************************************875 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 347 aa
Download sequence Send
to blast |
MWPPSSAARV LNYSIPHDMG MVGLRDLFVV APASSFHHSS LNEPNLMAEG LGGGNPATAL 60
GVGLGVIPLL TAAPCIADDG GVNGRSGRGG GGIQLWQNPG LNGGNNNNAS VMQTIGASSS 120
SSTCQDCGNQ AKKDCSHRRC RTCCKSRGYD CSTHVKSTWV PASRRRERQL LASSTGASSA 180
SMSLSAGSGV KKARLVSSNA ATSHTSNSNT PPRSFETTSC HQDPTFKETL PGQILAPATF 240
KCVKVTSIND GDDEFAYQAM VKIGGHVFKG FLYDQGEESG TREHQQPGMP NISDLHLGGG 300
NGGGGMHKVS CSTTGLEAPL ADVYGGGSTS GGGILGGSGY GNPIIN*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | GQ847758 | 0.0 | GQ847758.1 Kalanchoe blossfeldiana cultivar Celine SHI-related protein SRS2 mRNA, partial cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.4 | 9e-68 | Lateral root primordium (LRP) protein-related |
