PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0281s0017.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 151aa    MW: 16377.5 Da    PI: 8.4688
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0281s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26034.27e-112366143
               DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvl 43
                         +C  Ck+l rkCa++C+  py+ ++q +++fa+vhk+F  s v+
  Kalax.0281s0017.1.p 23 PCKDCKFLWRKCATGCICGPYISSDQgAARFAAVHKVFAYSVVT 66
                         7************************989**********998776 PP
2DUF26027.96.4e-0965995993
               DUF260 59 sslvyeAearardPvyGavgvilklqqqleqlkae 93
                          +  yeA+ar+ dPvyG+v+ i+ lq+ql+++k  
  Kalax.0281s0017.1.p 65 VTTSYEAQARLCDPVYGCVSAIRVLQRQLMNKKIA 99
                         5778*************************998854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508918.88122128IPR004883Lateral organ boundaries, LOB
PfamPF031954.6E-92366IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-66597IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MADPTGGGRV SDAMVPATAT NPPCKDCKFL WRKCATGCIC GPYISSDQGA ARFAAVHKVF  60
AYSVVTTSYE AQARLCDPVY GCVSAIRVLQ RQLMNKKIAA TNSLQISQQL QQMSSMSSAM  120
LQPAYSYNSS SSNNNDNSYY FFSTNNLEFF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-192312011126LOB family transfactor Ramosa2.1
5ly0_B2e-192312011126LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023766371.11e-37LOB domain-containing protein 20
SwissprotQ9SRV37e-29LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A2J6L8963e-36A0A2J6L896_LACSA; Uncharacterized protein
STRINGcassava4.1_028764m1e-34(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.12e-28LOB domain-containing protein 20