PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

M-type_MADS

Protein Properties

Length: 79aa MW: 8790.27 Da PI: 10.1964

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0279s0029.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92.2	2.5e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+k rqvtfskR+ g++KKA+ELSvLCd++va+ ifss+gk+yeyss Kalax.0279s0029.3.p 9 KRIEDKNSRQVTFSKRKSGLMKKANELSVLCDVDVALFIFSSKGKMYEYSS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.1E-38	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	30.992	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.31E-33	2	61	No hit	No description
SuperFamily	SSF55455	6.93E-30	2	69	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-29	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.3E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-29	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-29	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 79 aa Download sequence Send to blast
MGRGKVELKR IEDKNSRQVT FSKRKSGLMK KANELSVLCD VDVALFIFSS KGKMYEYSSG 60 SRCVCKSFYG KIKDPVGE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6bz1_A	2e-20	1	59	1	59	MEF2 CHIMERA
6bz1_B	2e-20	1	59	1	59	MEF2 CHIMERA
6bz1_C	2e-20	1	59	1	59	MEF2 CHIMERA
6bz1_D	2e-20	1	59	1	59	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024969696.1	2e-28	truncated transcription factor CAULIFLOWER A-like isoform X1
Refseq	XP_024969701.1	3e-28	truncated transcription factor CAULIFLOWER A-like isoform X2
Swissprot	Q41274	1e-25	AGL8_SINAL; Agamous-like MADS-box protein AGL8 homolog
TrEMBL	A0A2P5B948	3e-28	A0A2P5B948_PARAD; MADS-box transcription factor
STRING	VIT_14s0068g01800.t01	2e-27	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	1e-27	AGAMOUS-like 8

Link Out ? help Back to Top
Phytozome	Kalax.0279s0029.3.p

Publications ? help Back to Top
Menzel G,Apel K,Melzer S Identification of two MADS box genes that are expressed in the apical meristem of the long-day plant Sinapis alba in transition to flowering. Plant J., 1996. 9(3): p. 399-408 [PMID:8919916]