PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0277s0055.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 752aa    MW: 82367 Da    PI: 6.1419
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0277s0055.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.48.1e-2164119156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          r+k +++t++q++eLe++++++++p++++r eL+++l+L++rqVk+WFqNrR+++k
  Kalax.0277s0055.1.p  64 RKKYHRHTPQQIQELEAFYKECPHPDEKQRLELSRRLNLETRQVKFWFQNRRTQMK 119
                          7999*************************************************999 PP
2START1816.5e-572614842205
                          HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
                START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                          la +a++el+k+a+++  +W++ss    e +n +e+l +f+++ +     +  +a+r++g+v   +  lve+++d + qW   ++    +
  Kalax.0277s0055.1.p 261 LAVTAMDELMKMAAVNTSLWSSSSdgvkEVLNFEEYLATFPPTIGpkpnnFVLDASRDTGLVCLKSLALVETFMDLN-QWVSVFPslvaR 349
                          7899***********************999************999********************************.************ PP

                          EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTC CS
                START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksng 160
                          a+t+ vis+g      g+lqlm+aelq+lsplvp R + f+R+++++++g+w++vd S+d   + +   s++  +++lpSg++i+++++g
  Kalax.0277s0055.1.p 350 ASTTTVISPGldgssnGTLQLMQAELQVLSPLVPlRQVKFLRFCKKHEEGKWAVVDLSIDAVHEGSVaLSPFSLCRRLPSGCIIQEMPDG 439
                          ******************************************************************9*9********************* PP

                          EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                           skvtw+eh+ ++++++h l+r+l++sg+ +gak+w+a lqr+ce
  Kalax.0277s0055.1.p 440 FSKVTWIEHTQYDENVVHPLYRRLLGSGMGFGAKRWLASLQRHCE 484
                          ********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.09E-2053121IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-2155121IPR009057Homeodomain-like
PROSITE profilePS5007117.49161121IPR001356Homeobox domain
SMARTSM003892.8E-1963125IPR001356Homeobox domain
CDDcd000866.90E-2064121No hitNo description
PfamPF000461.7E-1864119IPR001356Homeobox domain
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PROSITE profilePS5084840.849251488IPR002913START domain
SuperFamilySSF559611.95E-26252486No hitNo description
CDDcd088754.20E-108255484No hitNo description
SMARTSM002342.7E-40260485IPR002913START domain
PfamPF018521.6E-49261484IPR002913START domain
SuperFamilySSF559612.75E-17516721No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MQLTRMEGGG SEGGLIGAGE LVDQHLVPGV LDGFDESRSG SENLDAVSGD DQSIMRGEGR  60
APKRKKYHRH TPQQIQELEA FYKECPHPDE KQRLELSRRL NLETRQVKFW FQNRRTQMKT  120
QIERHENMLL KKENDKLRFE QAAMKNALRN PLCTSCGGPV VSPELPFDEQ TLKSENARLR  180
DELTRICLLT EKFLGRPISS IASSLTQRST TSTLDFSLGN IGFQGLNSMD HALSSGLDMS  240
LLGSTVSLPE APVDKSFIVQ LAVTAMDELM KMAAVNTSLW SSSSDGVKEV LNFEEYLATF  300
PPTIGPKPNN FVLDASRDTG LVCLKSLALV ETFMDLNQWV SVFPSLVARA STTTVISPGL  360
DGSSNGTLQL MQAELQVLSP LVPLRQVKFL RFCKKHEEGK WAVVDLSIDA VHEGSVALSP  420
FSLCRRLPSG CIIQEMPDGF SKVTWIEHTQ YDENVVHPLY RRLLGSGMGF GAKRWLASLQ  480
RHCEGLAALM ASGEPVENPS GMTASGRKSM FKLARRMSDN FCSGVCASLM SKWERLYPGN  540
VGEESVQLMS RKTVDNPGEP SGIVLSATAS VWMPVARQRL FDFLRDKRYR SDWDILSNGG  600
PIQEVVRISK GPDPGNCVSL LRCDTASPSQ EMLILQETWT DAASSLIVYA PVDTPAIQSV  660
LGGGDSTYVA LLPSGFALYP DPDPAQTGNP AAGCLLTAGF QILVNELPTA KLTVDSVTTV  720
EHLIHCTIEK IHQALDCAAP ASRSQNPVPH Q*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661562.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLA5BH090.0A5BH09_VITVI; Uncharacterized protein
TrEMBLF6I3160.0F6I316_VITVI; Uncharacterized protein
STRINGVIT_15s0048g02000.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]