PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

Kalax.0275s0046.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 262aa MW: 29622.2 Da PI: 6.5334

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0275s0046.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.7e-19	54	106	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++++eq++eLe+ Fe ++++ e++ +LAk+lgL+ rqV +WFqNrRa++k Kalax.0275s0046.2.p 54 KKRLKREQVRELERSFELGNKLDPERKLQLAKSLGLQPRQVAIWFQNRRARWK 106 44589***********************************************9 PP
2	HD-ZIP_I/II	119.8	1.5e-38	52	142	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 e+k+rl++eqv+ LE+sFe +kL+perK +la++Lglqprqva+WFqnrRAR+ktkqlEkdy Lk+++ + +++n++L++++++Lr+e Kalax.0275s0046.2.p 52 ERKKRLKREQVRELERSFELGNKLDPERKLQLAKSLGLQPRQVAIWFQNRRARWKTKQLEKDYGLLKKQFASAVADNDKLQSQNKQLRQE 141 69**************************************************************************************87 PP HD-ZIP_I/II 91 l 91 Kalax.0275s0046.2.p 142 F 142 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.3E-21	28	109	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.01E-20	45	110	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.908	48	108	IPR001356	Homeobox domain
SMART	SM00389	6.5E-19	51	112	IPR001356	Homeobox domain
CDD	cd00086	6.95E-16	53	109	No hit	No description
Pfam	PF00046	2.9E-16	54	106	IPR001356	Homeobox domain
PRINTS	PR00031	5.5E-6	79	88	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	83	106	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.5E-6	88	104	IPR000047	Helix-turn-helix motif
Pfam	PF02183	5.1E-8	108	147	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MMFLKRSVSF TEMNAGFEEE EEDGVGNNQE DELSDECGGG GGGGGSGLGG GERKKRLKRE 60 QVRELERSFE LGNKLDPERK LQLAKSLGLQ PRQVAIWFQN RRARWKTKQL EKDYGLLKKQ 120 FASAVADNDK LQSQNKQLRQ EFLKLQTLRS IDSVLEGTAS IKKEVPYHRT YSWSNNASEN 180 SYEMNLLDST RTPMISMNLF PSSFNRPATI SHLLETSLRS DPQPSRINQV VPDESLCNIL 240 CSMDDPTTGM WSWGEQHHFG Q*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	52	59	RKKRLKRE
2	100	108	RRARWKTKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010256832.1	1e-71	PREDICTED: homeobox-leucine zipper protein ATHB-13-like
TrEMBL	A0A1U8A4W0	3e-70	A0A1U8A4W0_NELNU; homeobox-leucine zipper protein ATHB-13-like
STRING	XP_010256832.1	4e-71	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15150.1	4e-51	homeobox 3

Link Out ? help Back to Top
Phytozome	Kalax.0275s0046.2.p