PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0267s0053.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 666aa    MW: 70928.8 Da    PI: 6.826
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0267s0053.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.82.9e-16440486455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Kalax.0267s0053.1.p 440 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 486
                          6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.16E-17432490No hitNo description
SuperFamilySSF474599.55E-21433496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-21433494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349436485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-14440486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-18442491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MPLPEFYSLA KGKHRSAQQS AAACPAEPSS LPGSDFVELV WENGQVVMQG QSSRGTKSTD  60
NTASFVDLPP QSSRFRDKGL AKGENSDAGK LLGMMDPVLS DFHMSVPSEL DDHDDMVPWL  120
SYHMDEPVQH NYGSDFFTEL SGVTANNLSN HPTNVSSEPR RSSGVRAMPV SQMNQFPSLH  180
GQCPFPSFRQ KVSNANTNCV NNAAQNLCGD SAPKRYSSFG HPTVKVQAQD PVQQLPSSSI  240
MNFSHFSRPA AMVKSSLDSV RATPELSVAE KLDGKDKGSV LTGVKPADPS LVASISGQRV  300
DNAGFKSQPV VLSAVDGSKL SQSRPVEMSN PADHFGHVGC QDSRTIGAST KQAAAVAPIG  360
NTAAGNVEKI AEPAVASSVC SGNSVDRASN DPTYGLKRKY RESEDSEYPS EDAEEESVGI  420
KKAATNRVGS GSKRSRAAEV HNLSERRRRD RINEKMRALQ ELIPNCNKVD KASMLDEAIE  480
YLKTLQLQVQ MMSMGSGLCM PPMMLPHAAH LPRFSPMGVG MGMGMGYGLG MLDNTPSSPL  540
IQMPSVPGPR FPMAPVPGLG SLNVAPMSNL PMYGFHGQGV PMPMSHAPVT SYPASSPVRP  600
LMDLNALSAV LPVGNLASSA QASQPKTPLA STDDHHLPTT SKAVEPSTTT VDVVPVREAT  660
QHNES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1444449ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010659764.11e-152PREDICTED: transcription factor PIF3 isoform X1
TrEMBLF6I4I61e-151F6I4I6_VITVI; Uncharacterized protein
STRINGVIT_14s0060g00260.t011e-152(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-69phytochrome interacting factor 3