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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Kalax.0266s0028.3.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
| Family |
MYB_related |
| Protein Properties |
Length: 309aa MW: 33625.2 Da PI: 9.618 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kalax.0266s0028.3.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 36.2 | 1.4e-11 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
+++WT+eE+ l+ +v ++G g W+tI + R+ ++k++w++
Kalax.0266s0028.3.p 5 KQKWTAEEESALKAGVVKHGAGKWRTILKDPEfssvlYLRSNVDLKDKWRN 55
79***********************************88***********9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 309 aa
Download sequence Send
to blast |
MGAPKQKWTA EEESALKAGV VKHGAGKWRT ILKDPEFSSV LYLRSNVDLK DKWRNMSVMA 60
NGWGSREKAR LALKRMQSAP KPGENQMLLT YGPHSEDESV DLKPLPSPSG AQQASGSKRT 120
FTRLDNLIME AINELKEPGG SNKTSIGNYI EEQYCAPPNF KRLLSAKLKL LVSSGKLVKV 180
KRKYRIRTSQ VSPESKNSPH PSSNLLEGRS SLPSKIDYDN FNLSDIKTTS RAEIDLELAK 240
MRNMTAEEAA IAAARAVAEA ETAIAEAEEA AREAEAAEAD AEAAMAFAEA ARKTLKGRSD 300
IKTVGACC*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
| Publications
? help Back to Top |
- Alexandrov NN, et al.
Features of Arabidopsis genes and genome discovered using full-length cDNAs.
Plant Mol. Biol., 2006. 60(1): p. 69-85
[PMID:16463100] - Schrumpfová PP, et al.
Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
Plant J., 2014. 77(5): p. 770-81
[PMID:24397874] - Liang SC, et al.
Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
PLoS Genet., 2015. 11(12): p. e1005660
[PMID:26642436] - Fulcher N,Riha K
Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
Front Genet, 2015. 6: p. 349
[PMID:26779251] - Kotliński M, et al.
Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
Plant Physiol., 2017. 174(1): p. 27-34
[PMID:28298478]
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