PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0265s0045.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 386aa MW: 42466.5 Da PI: 6.0614

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0265s0045.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.7e-09	218	265	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++ Lq Kalax.0265s0045.1.p 218 SHSLAERVRREKISQRMRFLQDLVPGC----NKITGKAGMLDEIINYVQALQ 265 8************************....999**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.02E-16	212	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.05E-10	212	269	No hit	No description
PROSITE profile	PS50888	15.085	214	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.7E-16	214	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-6	218	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-8	220	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MTSDCFGSSR NLSKSGSEIT VFERQQSQMK FLQQQHRSSA SETKYSDQVQ KIQASLEPQN 60 LTKVESGLLS PMMTTDPCLG WPELGHLSMP KRMLHSSSDY VHDQYTQEMS TLTTALSTGV 120 PYRTAMLEKE GDDSVVKESP KIRETDQWLT PKFAAESIAN EERIEKGIAE EDSNITLQSV 180 PKKGRTSIGT SKENPNTSEV TKPEYIHVRA RRGQATDSHS LAERVRREKI SQRMRFLQDL 240 VPGCNKITGK AGMLDEIINY VQALQRQVEF LSMKLAAVTT AQDYCNDPAL SYHIVSMPDA 300 PSNAYLPFNQ LKASNISAAA TTSAPASGHS SLLATAGFAA LTTWDADFQA APGIEFHQRR 360 STSFSSQPNE GDTSGMSTLS LCFDE*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MTSDCFGSSR NLSKSGSEIT VFERQQSQMK FLQQQHRSSA SETKYSDQVQ KIQASLEPQN  60
LTKVESGLLS PMMTTDPCLG WPELGHLSMP KRMLHSSSDY VHDQYTQEMS TLTTALSTGV  120
PYRTAMLEKE GDDSVVKESP KIRETDQWLT PKFAAESIAN EERIEKGIAE EDSNITLQSV  180
PKKGRTSIGT SKENPNTSEV TKPEYIHVRA RRGQATDSHS LAERVRREKI SQRMRFLQDL  240
VPGCNKITGK AGMLDEIINY VQALQRQVEF LSMKLAAVTT AQDYCNDPAL SYHIVSMPDA  300
PSNAYLPFNQ LKASNISAAA TTSAPASGHS SLLATAGFAA LTTWDADFQA APGIEFHQRR  360
STSFSSQPNE GDTSGMSTLS LCFDE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	4e-47	cryptochrome-interacting basic-helix-loop-helix 1

Link Out ? help Back to Top
Phytozome	Kalax.0265s0045.1.p