![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0264s0013.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 366aa MW: 39950.3 Da PI: 6.6043 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.4 | 1.1e-12 | 305 | 350 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k s +++L +Av+YIk+Lq Kalax.0264s0013.1.p 305 SIAERVRRTKISEKMRKLQELVPNM----DKQTSTSDMLDLAVDYIKDLQ 350 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.053 | 299 | 349 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.76E-16 | 302 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.17E-13 | 303 | 354 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.4E-15 | 304 | 360 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-13 | 305 | 355 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-9 | 305 | 350 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 366 aa Download sequence Send to blast |
MDADLQQAHQ FNPIAAGCGL TRYKSAPTSY FSSFVMDYKD VLRPPPPKPL SPQFDRIFAQ 60 LAAEISGDHA LDVEATMPVA KHQIEQPEQL MMASYTPSAA LPPPHPLSRT SSGVDAFYRG 120 LKPSAPAPPV RIPVVEKQSS GSNLARHNSL PSGLFSKIDV HNVAAAYFGA GSSQANSSTE 180 LMSGYSRIGD DNTKQSNPEE GDDYMINGFW NDSSSTEKLL TGVKRERAED EFLMGGVLDD 240 VKPFSGESNI PGGEVKKPGL LSHHLSLPKS SMEILSAMEK FLELPDTTVP VGVRARRGCA 300 THPRSIAERV RRTKISEKMR KLQELVPNMD KQTSTSDMLD LAVDYIKDLQ ERVQILKACS 360 ERCTC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51140.1 | 4e-44 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0264s0013.1.p |