PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0263s0048.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 278aa MW: 30794.3 Da PI: 8.1866

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0263s0048.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.4	5.4e-13	104	156	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r++ah e+Er RR+++ + ++ Lr++lP +K s ++ +A +YIk+Lq Kalax.0263s0048.1.p 104 RKEAHREIERLRRQEMSNLYSSLRSHLPDeY---IRGKRSISDHMNEAANYIKHLQ 156 799************************77...*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.07E-15	101	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-10	101	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.018	103	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.06E-13	103	160	No hit	No description
Pfam	PF00010	4.2E-10	104	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.8E-5	109	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MFPFQRGDEL FQIPHTTHPD NNHIIHHQHQ NQPADGYQDH HHHRIIFMGH DRDDLIPASS 60 STARDAAGSA RGVRGGGRRK SPLLAASASP AGGCGDAQIG SDRRKEAHRE IERLRRQEMS 120 NLYSSLRSHL PDEYIRGKRS ISDHMNEAAN YIKHLQQRNK ELRVKRDELK KGDTSSMTLE 180 PCSSSSARSC AVQVNACWGG VEIVIASGFR DPSPPMPISR VLRALQGDGF SVYSCVSAAV 240 NDSVFHTIQA QVGDDTCLDL PRLQEKLFDV VSSSWRS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	5e-40	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0263s0048.1.p