PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0262s0008.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 624aa    MW: 68676.3 Da    PI: 4.7989
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0262s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.71.3e-054334661755
                          HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           ++f+ L++l+P+       K++K++ L  ++ Y+k+L+
  Kalax.0262s0008.1.p 433 DERFSALQSLVPSH-----DKVDKVMLLDATISYLKELE 466
                          589**********7.....7****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.8E-527190IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.324416465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-4423471IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.38E-6432470No hitNo description
Gene3DG3DSA:4.10.280.102.1E-9432477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-9432480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MYAFENLRKQ LALAVRCYQW SYAIFWSVSI TQPSVLEWGS GYYNGDIKTR KTSQSEELNA  60
DLIDSQRSDQ LRELYESLAA GDSNSQARRP SAALSPEDLS DTEWYYLVCM SFVFNIGQGL  120
PGRTFEVGQP IWLCNAHIAD SKAYTRSLLA KSASVQTVVC FPCLGGVVEM GVTEQVPEDM  180
NLVVCIKASF LDDFLPQPNV PNISLPSAIL NNDMELPGIG LDNDYLDANL DPIIECDELD  240
SLSTDDSASK VAPDQVDDSY MVTGGASQVQ SWHFVDEEFS NCVRNSFNTS DCISQTFELS  300
AKAKLPSKIE AHRIPCPAEC TKLESLDVRS DDLHYQSVVS TLLKSSDQLV LGPHFGCCIK  360
GTSFVKWSRV GLSGASSLSD SRSQVMLKKA LFDVGRMHSG GTAVDCTEVL DRYNVPKISR  420
DESDREHLPD VLDERFSALQ SLVPSHDKVD KVMLLDATIS YLKELEKRVE KLESSKEPAP  480
LPGTSIPTKS QDDVERTSDN YGTNRTSSEN NPSTNKRKAS HINQTDLQAT SKTSRDSSTD  540
HICVSIVDNN VMIEMRCCWR ECLLLKVLDA IGSLSLDSHS VQSSTAANGI LQLTIKSKFK  600
GSGCPSVGVI RRKLQRILLA QSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-142018324185Transcription factor MYC3
4rqw_B1e-142018324185Transcription factor MYC3
4rru_A2e-14818351224Transcription factor MYC3
4rs9_A1e-142018324185Transcription factor MYC3
4ywc_A2e-14818351224Transcription factor MYC3
4ywc_B2e-14818351224Transcription factor MYC3
4yz6_A1e-142018324185Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007040249.20.0PREDICTED: transcription factor EGL1
TrEMBLA0A061GCJ10.0A0A061GCJ1_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
STRINGEOY247500.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-152bHLH family protein