PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0255s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 241aa MW: 26855.2 Da PI: 9.5857 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.1 | 1.7e-19 | 84 | 138 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq + Lee F++n++++ +++eeLA++l+L rqV vWFqNrRa+ k Kalax.0255s0004.1.p 84 RKKLRLSKEQSRLLEESFRQNHTLNPKQKEELADRLKLRPRQVEVWFQNRRARSK 138 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 117.1 | 9.9e-38 | 84 | 172 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rlskeq++lLEesF+++++L+p++K+ela +L+l+prqv+vWFqnrRAR k+kq+E ++e+Lkr++ +l+e+n++L+keveeLr+ Kalax.0255s0004.1.p 84 RKKLRLSKEQSRLLEESFRQNHTLNPKQKEELADRLKLRPRQVEVWFQNRRARSKLKQTEIECEYLKRWFGSLTEQNQKLQKEVEELRA 172 69*************************************************************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-19 | 56 | 141 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.55E-20 | 70 | 141 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.815 | 80 | 140 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-17 | 82 | 144 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.58E-16 | 83 | 141 | No hit | No description |
Pfam | PF00046 | 8.5E-17 | 84 | 138 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 115 | 138 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 5.7E-10 | 140 | 174 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 9.2E-21 | 140 | 183 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MGGVTPTSTC LDLTISVPGS SSARDVNMKP LRLLSKRSEP DDNWINLGYP KTSEDAEDND 60 TDSPNEDQGR GGGGGGWDRN PPPRKKLRLS KEQSRLLEES FRQNHTLNPK QKEELADRLK 120 LRPRQVEVWF QNRRARSKLK QTEIECEYLK RWFGSLTEQN QKLQKEVEEL RAMKVGPPSV 180 LSARSCEPTL ASSLTMCPRC ERVSSNTARV EKPATGPAST AAMSDKVAAL QQFRQPSAAF 240 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 140 | RRARSKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006605480.1 | 8e-80 | homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q0JKX1 | 3e-68 | HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q9XH38 | 3e-68 | HOX3_ORYSI; Homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | I1ND77 | 2e-78 | I1ND77_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G01770.1 | 3e-79 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 3e-69 | homeobox-leucine zipper protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0255s0004.1.p |