PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0254s0014.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 499aa    MW: 54654.1 Da    PI: 9.8154
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0254s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.3e-17164213155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Kalax.0254s0014.1.p 164 SPYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 213
                          68*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-15164222IPR016177DNA-binding domain
PROSITE profilePS5103217.714165221IPR001471AP2/ERF domain
SMARTSM003803.5E-32165227IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-17166221IPR001471AP2/ERF domain
PfamPF008475.5E-9166213IPR001471AP2/ERF domain
CDDcd000182.04E-11166221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MFYKPYAATN PNILITNKNK PMFDLNIHYS HHHQSPHPSS TDSAATSSSS VIVNSTSAAD  60
EDSASINNHT SVPPSTLFFD ILIRDHENPV PVAGAGLVAR TLFPSAVESS SSPPVVPQWL  120
NLSFADSASS HSELCSLQQP NHHNLQQLKP VGKKSRRGPR SRSSPYRGVT FYRRTGRWES  180
HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVDADINF DLKDYDNDMK QMAELSKEEF  240
VHVLRRQSTG FARSSSKYKG VTLHKYGRPD HAGLGQALAQ SFYPVVFDRE AAFARYNEGE  300
AVTNTEANTY PRGYLTLNPI NKGSDGTLDL SLGITPSSNN SCPTGTNITA IPGLPAYARH  360
GRDRDMFNAS AVRVLCGQPS SHGFTNPSPP VWQFQQHPSN PAHMPQIKTA TMERRMSITN  420
TPKRFPDWAV RVPIGRGGSI TAPMQLLSSA ASSGFPTGVV PTAPTRIASA IPLSKSPSNN  480
DVVYYNYRTI QMNSFPYR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotB8AMA91e-64AP22_ORYSI; APETALA2-like protein 2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-58related to AP2.7