PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0251s0031.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 330aa    MW: 37974.7 Da    PI: 5.3577
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0251s0031.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.9e-181057148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd +l  +++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  Kalax.0251s0031.1.p 10 RGPWTDEEDRILSSYIANHGEGRWNSLARCAGLNRTGKSCRLRWLNYL 57
                         89********************************************97 PP
2Myb_DNA-binding49.31.1e-1563106146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ + eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Kalax.0251s0031.1.p  63 RGNISLEEQLLILELHSRWGNR-WSKIAKYLP-GRTDNEIKNYWRT 106
                          78899*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.591561IPR017930Myb domain
SuperFamilySSF466891.54E-308104IPR009057Homeodomain-like
SMARTSM007172.2E-15959IPR001005SANT/Myb domain
PfamPF002492.1E-161057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-231164IPR009057Homeodomain-like
CDDcd001673.75E-121257No hitNo description
PROSITE profilePS5129418.23262112IPR017930Myb domain
SMARTSM007173.3E-1462110IPR001005SANT/Myb domain
PfamPF002491.5E-1463106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-2265111IPR009057Homeodomain-like
CDDcd001671.27E-783106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MTTMMEDLRR GPWTDEEDRI LSSYIANHGE GRWNSLARCA GLNRTGKSCR LRWLNYLRPD  60
VRRGNISLEE QLLILELHSR WGNRWSKIAK YLPGRTDNEI KNYWRTRVQK HAKQLKCDVN  120
SQQFKDTLRY LWMPRLLERI PAACYSDNHQ LTAPPTTAST LQTDHQSHAA VGGFANSTDP  180
SMGTNRDRIR PISEGYEPCY GPFSDDQVSP VSDLIDDNCD DTDYVPAHNY YDYQNNYISN  240
GAGNSSDSIS SLVNNPMGMG HDCYNVYEYD SAGVTMMGEE DQMHPNNNNN GDEWMMQNGD  300
DFWNADHLWL NNSKQQYQQQ HVIYSNNFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2471101103MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-24710424120MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027944.15e-92PREDICTED: transcription factor MYB108-like
TrEMBLA0A1S4DCZ63e-87A0A1S4DCZ6_TOBAC; transcription factor MYB108-like
TrEMBLA0A1U7XQE93e-87A0A1U7XQE9_NICSY; transcription factor MYB108-like
STRINGXP_009791846.14e-88(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-79myb domain protein 78