PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0247s0006.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 838aa    MW: 91744.5 Da    PI: 6.1425
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0247s0006.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.2e-192583357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         k  ++t+eq+eeLe++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Kalax.0247s0006.2.p 25 KYVRYTAEQVEELERVYAETPKPSSLRRQQLVRECpilaNIEPKQIKVWFQNRRCREKQ 83
                         56789****************************************************97 PP
2START143.12.8e-451643692204
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W +++++ e+   + +   g
  Kalax.0247s0006.2.p 164 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFTISESSSGVAARACGLVGLEPP-KIAEILKDRLSWFRDCRSLEVFTSLPTPngG 252
                          68999*****************************************************.8888888888***********999976556* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                           ++l ++++ a++ l+p Rd +++Ry+  l+ g++v++++S++ ++  p+   ++vRae+lpSg+li+++++g+s +++v+h +l++ ++
  Kalax.0247s0006.2.p 253 SIELLYSQMFAPTILAPaRDLWTLRYTTLLENGSLVVCERSLSGTRAAPNaGGNFVRAEMLPSGYLIRSCDGGGSIIHIVDHLNLEALSV 342
                          *************************************************9999************************************* PP

                          HHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                START 178 hwllrslvksglaegaktwvatlqrqc 204
                          +++lr+l+ s+   ++k++ a+l++ +
  Kalax.0247s0006.2.p 343 PEVLRPLYTSSKLVAQKMTIAALRYAR 369
                          ***********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.7582084IPR001356Homeobox domain
SMARTSM003891.3E-152288IPR001356Homeobox domain
SuperFamilySSF466895.56E-172286IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-182489IPR009057Homeodomain-like
CDDcd000865.03E-162585No hitNo description
PfamPF000463.1E-162683IPR001356Homeobox domain
CDDcd146861.02E-577116No hitNo description
PROSITE profilePS5084823.256154380IPR002913START domain
Gene3DG3DSA:3.30.530.207.4E-16162343IPR023393START-like domain
SMARTSM002343.5E-35163371IPR002913START domain
SuperFamilySSF559612.61E-29164364No hitNo description
PfamPF018521.4E-42164369IPR002913START domain
PfamPF086701.2E-48693836IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MAMVVSQRRE NSGGSINKHL DASGKYVRYT AEQVEELERV YAETPKPSSL RRQQLVRECP  60
ILANIEPKQI KVWFQNRRCR EKQRNESSRL QTVNHKLTAM NKLLMEENDR LQKQVSHLVY  120
ENGYIRQQLQ SANGAVADGS CESVVTTPRQ SLRDATNPAG LLAIAEETLA EFLSKATGTA  180
VDWVQMPGMK PGPDSVGIFT ISESSSGVAA RACGLVGLEP PKIAEILKDR LSWFRDCRSL  240
EVFTSLPTPN GGSIELLYSQ MFAPTILAPA RDLWTLRYTT LLENGSLVVC ERSLSGTRAA  300
PNAGGNFVRA EMLPSGYLIR SCDGGGSIIH IVDHLNLEAL SVPEVLRPLY TSSKLVAQKM  360
TIAALRYARQ VAHETSGEEV YSLGRQPAVL RTFSQRLSRG FNDAVNGFSD AGWSVMSGDG  420
ADDVIISVNS TRNLNSLSSA NNPFPVFGGI LCAKASMLLR NVPSGVLVRF LREHRSEWAD  480
YNVDAYSAAS IKSNSFAFPG MRPASFSSSQ IIMPLGQTIE NEETLEVIRI EGHSLSPEDA  540
YMSRDIHLLQ ICSGTEEYST GACAELIFAP INEMFPDDMP LLPSGFRIIP LDTKSAADIP  600
DQLKAHRTLD LTSSLEVSQV SSQAPCGDTR SVLTIAFQFP FENNLQDSVA TMARQYVRSV  660
ITSVQRVATA ITPTGLFPNE GPKISSDTPE ALTLAQWICY SYSYHIGADL LRAGSLAGDR  720
VLKHLWHHPD AILCCSIKAM PVLIFANQAG LDMLETTLAA LQDVSLDKIF DESGRKALCS  780
DFAKIMQQGF AYLPAGICVS TMGRDVSYSQ SVAWKVLAGD DQTVHCLAFC FVNWSFM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010651164.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA
RefseqXP_019076130.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLD7SKZ00.0D7SKZ0_VITVI; Uncharacterized protein
STRINGVIT_06s0004g02800.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]