PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0245s0044.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 231aa MW: 26478.1 Da PI: 9.9023 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.3 | 3.1e-19 | 73 | 125 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++t+eq+ Le F +++++ e++e+LA+klgL++rqV +WFqNrRa++k Kalax.0245s0044.1.p 73 KRKLTEEQVSLLEVNFGNEHKLEWERKERLAAKLGLDQRQVAIWFQNRRARWK 125 4589************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 110.7 | 1e-35 | 72 | 161 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kr+l++eqv+lLE +F +e+kLe erK++la +Lgl++rqva+WFqnrRAR+ktk+lE+dy++Lk+a+d+l+ +n +Le++v +L e+l Kalax.0245s0044.1.p 72 RKRKLTEEQVSLLEVNFGNEHKLEWERKERLAAKLGLDQRQVAIWFQNRRARWKTKKLEEDYSRLKAAHDNLVLHNFQLESQVIKLVERL 161 8*************************************************************************************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.342 | 67 | 127 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.3E-16 | 70 | 131 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.54E-16 | 72 | 128 | No hit | No description |
SuperFamily | SSF46689 | 2.82E-17 | 73 | 135 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.4E-16 | 73 | 125 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-19 | 74 | 134 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.4E-6 | 98 | 107 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 102 | 125 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.4E-6 | 107 | 123 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MISVINNNKA EAGDDQMLSI SHMYPAAGVV YAQMETEIKQ EAAGDKKMRK RRRKKSKACR 60 GGESIREAGA LRKRKLTEEQ VSLLEVNFGN EHKLEWERKE RLAAKLGLDQ RQVAIWFQNR 120 RARWKTKKLE EDYSRLKAAH DNLVLHNFQL ESQVIKLVER LGRTENKARR LWERSSEGTS 180 SNSPTSCLSL DAPFLGGFGI IQDGLHNNVF YMDQENYVPG AMEWPSMHDM * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 45 | 53 | KKMRKRRRK |
2 | 48 | 52 | RKRRR |
3 | 48 | 54 | RKRRRKK |
4 | 52 | 74 | RKKSKACRGGESIREAGALRKRK |
5 | 70 | 75 | LRKRKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021679570.1 | 4e-58 | homeobox-leucine zipper protein ATHB-40-like | ||||
Swissprot | O23208 | 2e-52 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A314UKD2 | 1e-55 | A0A314UKD2_PRUYE; Homeobox-leucine zipper protein ATHB-40 | ||||
STRING | XP_010531178.1 | 2e-56 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 1e-48 | homeobox protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0245s0044.1.p |
Publications ? help Back to Top | |||
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