PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0241s0052.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 235aa    MW: 26737 Da    PI: 7.071
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0241s0052.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.1e-1975129256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          ++R++++++ql++Le+ F+++ ++  +++  LA++l+L+ rqV +WFqNrRa+ k
  Kalax.0241s0052.1.p  75 KRRRRISADQLKTLEKSFQEEAKLRPAKKVSLARELNLEPRQVAIWFQNRRARVK 129
                          8999*************************************************88 PP
2HD-ZIP_I/II103.91.4e-3376166292
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          ++rr+s++q+k+LE+sF+ee kL p +Kv+lareL+l+prqva+WFqnrRAR+k+k+lEk y+ L+++++ l  e+++L++ev+ L++ l
  Kalax.0241s0052.1.p  76 RRRRISADQLKTLEKSFQEEAKLRPAKKVSLARELNLEPRQVAIWFQNRRARVKSKNLEKMYDELREQFNVLYLEKQKLQHEVHILQTLL 165
                          89***********************************************************************************99877 PP

          HD-ZIP_I/II  92 k 92 
                          k
  Kalax.0241s0052.1.p 166 K 166
                          6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-1945132IPR009057Homeodomain-like
SuperFamilySSF466897.27E-1960132IPR009057Homeodomain-like
PROSITE profilePS5007118.09171131IPR001356Homeobox domain
SMARTSM003891.4E-1674135IPR001356Homeobox domain
CDDcd000866.66E-1675132No hitNo description
PfamPF000461.0E-1675129IPR001356Homeobox domain
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEWSLPIAEA NPSSSTNLPF SVSATNNHYP LMPYYPSFNF NHHHPHDHSA ASPEMETREI  60
TDMESSGNRQ SEEAKRRRRI SADQLKTLEK SFQEEAKLRP AKKVSLAREL NLEPRQVAIW  120
FQNRRARVKS KNLEKMYDEL REQFNVLYLE KQKLQHEVHI LQTLLKRQVC CNQHVSTYEE  180
ISVDNTSATA ALPAAPLADF YSVGEAGERF QTPHGLPSCT QGTPAWAAQL PPEP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17479KRRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.14e-31homeobox 51