PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Kalax.0241s0012.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Nin-like

Protein Properties

Length: 948aa MW: 104436 Da PI: 5.7686

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0241s0012.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.9	2.1e-28	602	652	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAA+++gvc+T+LKriCRq+GI+RWP+Rki+++ Kalax.0241s0012.1.p 602 EKSVSLSVLRQYFSGSLKDAARSIGVCPTTLKRICRQHGISRWPSRKINKV 652 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.87	585	672	IPR003035	RWP-RK domain
Pfam	PF02042	2.0E-25	605	652	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.85E-21	837	931	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.9E-20	844	926	No hit	No description
PROSITE profile	PS51745	19.216	847	929	IPR000270	PB1 domain
SMART	SM00666	3.0E-18	847	929	IPR000270	PB1 domain
Pfam	PF00564	1.1E-13	848	926	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 948 aa Download sequence Send to blast
MEQSQFKDKG MEYFPSSRPS NNSVSDGIRS VVMDDAFSTM CEITNFDTYA GWCSTPVPDQ 60 IYASYGLFSS LQPTPASYQP FDGLNFSEQN LISVAPSSGA TVHPNVLVSP FGSEDKPLPS 120 QTGNYHFQRG LASSDEDECG IELCPAASGN NCHPSDGKYL ITKPLAQSLD EKMLRVLSLF 180 KESAGAGILA QVWVPVKHGD QLILTTSAQP YLLDNMLAGY REVSRGYTFS VKETLGSFPG 240 LPGRVYISKV PEWTSNVIYY NKTEYLRVKH AVDNEVRGSI AVPVFSPSES TCCAVLELVT 300 VKEKPNFDLE MQVVCKALET VNLKTAAPPR LLSQSLSKNQ RDALAEIADV LRTVCHAHRL 360 PLALTWIPCT YTEGLGEEFI RLHVEANTER RGKRILCIEE SACFVNEQSM EGFVHACCEN 420 YLEGNRGIAG KALQSNQPFF LPDVKCYDIS EYPLVQHARK FGLSAAVAIR LRSTFTGADD 480 YILELFLPVN MTGSSEQQLL LNNLSSTMQK VCKTLRTVSD AELAETVIPK PYHDVTCQEF 540 KYTTVPDISS QLSLSTSDTN PIHKLPTDPS KSSTDKSEFD DSCLQDVNAQ RRLFEKKRST 600 VEKSVSLSVL RQYFSGSLKD AARSIGVCPT TLKRICRQHG ISRWPSRKIN KVNRSLRKIQ 660 TVLDSVQGVE GGLKFDSTTG GLVAARSLVH DLDKGKILHH DMTCNFPTQE MAPCVEISAI 720 KLEESYCGMG GNHLRAEQDI CFQNTGQGAL HKSRFPSVPS TDDAKSEGMD VMADSPLNKQ 780 GRRLESFLSR NSSSLGDDGI TDHNQPASSS MTDSSNGSLM NGSSSSPPSQ EDIYMREKAS 840 ADDTGSKITV KATFKEDTIR LKFEPSSGCF QLYEEVAKRF KLQVGNFKLK YRDDEDELVV 900 LESELDWQEC LEVIQSVGSR SVKFFVLEIP CVMGSSGSSN CFLGRGS*

Sequence ? help Back to Top

Protein Sequence Length: 948 aa Download sequence Send to blast

MEQSQFKDKG MEYFPSSRPS NNSVSDGIRS VVMDDAFSTM CEITNFDTYA GWCSTPVPDQ  60
IYASYGLFSS LQPTPASYQP FDGLNFSEQN LISVAPSSGA TVHPNVLVSP FGSEDKPLPS  120
QTGNYHFQRG LASSDEDECG IELCPAASGN NCHPSDGKYL ITKPLAQSLD EKMLRVLSLF  180
KESAGAGILA QVWVPVKHGD QLILTTSAQP YLLDNMLAGY REVSRGYTFS VKETLGSFPG  240
LPGRVYISKV PEWTSNVIYY NKTEYLRVKH AVDNEVRGSI AVPVFSPSES TCCAVLELVT  300
VKEKPNFDLE MQVVCKALET VNLKTAAPPR LLSQSLSKNQ RDALAEIADV LRTVCHAHRL  360
PLALTWIPCT YTEGLGEEFI RLHVEANTER RGKRILCIEE SACFVNEQSM EGFVHACCEN  420
YLEGNRGIAG KALQSNQPFF LPDVKCYDIS EYPLVQHARK FGLSAAVAIR LRSTFTGADD  480
YILELFLPVN MTGSSEQQLL LNNLSSTMQK VCKTLRTVSD AELAETVIPK PYHDVTCQEF  540
KYTTVPDISS QLSLSTSDTN PIHKLPTDPS KSSTDKSEFD DSCLQDVNAQ RRLFEKKRST  600
VEKSVSLSVL RQYFSGSLKD AARSIGVCPT TLKRICRQHG ISRWPSRKIN KVNRSLRKIQ  660
TVLDSVQGVE GGLKFDSTTG GLVAARSLVH DLDKGKILHH DMTCNFPTQE MAPCVEISAI  720
KLEESYCGMG GNHLRAEQDI CFQNTGQGAL HKSRFPSVPS TDDAKSEGMD VMADSPLNKQ  780
GRRLESFLSR NSSSLGDDGI TDHNQPASSS MTDSSNGSLM NGSSSSPPSQ EDIYMREKAS  840
ADDTGSKITV KATFKEDTIR LKFEPSSGCF QLYEEVAKRF KLQVGNFKLK YRDDEDELVV  900
LESELDWQEC LEVIQSVGSR SVKFFVLEIP CVMGSSGSSN CFLGRGS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002530298.1	0.0	protein NLP9
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	B9SWC9	0.0	B9SWC9_RICCO; Transcription factor, putative
STRING	XP_002530298.1	0.0	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Kalax.0241s0012.1.p

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]