PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0239s0069.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 302aa    MW: 33326.4 Da    PI: 5.6056
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0239s0069.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.24e-15102153155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i   A++Y+k+L+
  Kalax.0239s0069.1.p 102 QRMTHIAVERNRRKQMNEYLAVLRTLMPSS---YAQRGDQASIIGGAINYVKELE 153
                          79****************************...*******************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.17E-15100157No hitNo description
SuperFamilySSF474592.36E-18101170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.031101152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15102168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-12102153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-10107158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MALDAVVFPQ DPFGHNFTFK DYFQGIMEDE LSGGINYNLG AVDNIDTDSW SYDQLGFHKA  60
QENKSLLTTA PEPSPAKDPP VAARRKRRRT KACKNKEEVE NQRMTHIAVE RNRRKQMNEY  120
LAVLRTLMPS SYAQRGDQAS IIGGAINYVK ELEQLLQTLE AQKSTKNPKQ QDDHHSPFAN  180
FFTFPQYTAG ATAATPASTT DGDDEVAAEG RHGAAEIEVT MVESHANVKI LAKRCSGQLV  240
KLVAAFQSLS LTFQHLSVSS LDHMVMYSVS VKVEEGCELN SVDEIAAAVN QMLRNIDESL  300
G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18488RKRRR
28489RKRRRT
3102113RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003544814.11e-101transcription factor bHLH96
RefseqXP_028198704.11e-101transcription factor bHLH96-like
SwissprotQ9C7T44e-85BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A445H7901e-100A0A445H790_GLYSO; Transcription factor bHLH96
TrEMBLI1MAX11e-100I1MAX1_SOYBN; Uncharacterized protein
STRINGGLYMA14G35560.11e-100(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-75bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]