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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0239s0069.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bHLH | ||||||||
Protein Properties | Length: 302aa MW: 33326.4 Da PI: 5.6056 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.2 | 4e-15 | 102 | 153 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i A++Y+k+L+ Kalax.0239s0069.1.p 102 QRMTHIAVERNRRKQMNEYLAVLRTLMPSS---YAQRGDQASIIGGAINYVKELE 153 79****************************...*******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.17E-15 | 100 | 157 | No hit | No description |
SuperFamily | SSF47459 | 2.36E-18 | 101 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.031 | 101 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-15 | 102 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-12 | 102 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-10 | 107 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MALDAVVFPQ DPFGHNFTFK DYFQGIMEDE LSGGINYNLG AVDNIDTDSW SYDQLGFHKA 60 QENKSLLTTA PEPSPAKDPP VAARRKRRRT KACKNKEEVE NQRMTHIAVE RNRRKQMNEY 120 LAVLRTLMPS SYAQRGDQAS IIGGAINYVK ELEQLLQTLE AQKSTKNPKQ QDDHHSPFAN 180 FFTFPQYTAG ATAATPASTT DGDDEVAAEG RHGAAEIEVT MVESHANVKI LAKRCSGQLV 240 KLVAAFQSLS LTFQHLSVSS LDHMVMYSVS VKVEEGCELN SVDEIAAAVN QMLRNIDESL 300 G* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 84 | 88 | RKRRR |
2 | 84 | 89 | RKRRRT |
3 | 102 | 113 | RMTHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003544814.1 | 1e-101 | transcription factor bHLH96 | ||||
Refseq | XP_028198704.1 | 1e-101 | transcription factor bHLH96-like | ||||
Swissprot | Q9C7T4 | 4e-85 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A445H790 | 1e-100 | A0A445H790_GLYSO; Transcription factor bHLH96 | ||||
TrEMBL | I1MAX1 | 1e-100 | I1MAX1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G35560.1 | 1e-100 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 1e-75 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0239s0069.1.p |
Publications ? help Back to Top | |||
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