PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0234s0025.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

SBP

Protein Properties

Length: 1045aa MW: 114605 Da PI: 7.4543

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0234s0025.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.3	1.4e-40	128	205	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C +dls+ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ Kalax.0234s0025.1.p 128 TCQVDSCMVDLSDAKDYHRRHKVCEAHSKATQALVGKQMQRFCQQCSRFHVLSEFDEGKRSCRRRLAGHNRRRRKTQP 205 6**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.7E-33	122	190	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.915	126	203	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.66E-37	127	207	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.7E-29	129	202	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1045 aa Download sequence Send to blast
MARKRDLSYQ QQELMIDQPY HPSGGLQNSR DYWNSKGWNW DCTRFVAQQV NQNAMNLDIP 60 VQSTQNKSNI NGVAVEDDGS LCLKLGSGSG GSSSSDEPQL RPAKRVAASP GGKNSRSPGA 120 GGNGNHPTCQ VDSCMVDLSD AKDYHRRHKV CEAHSKATQA LVGKQMQRFC QQCSRFHVLS 180 EFDEGKRSCR RRLAGHNRRR RKTQPDDATS RLLSAGGQEN AVNTGLDLVG LLAALARAQG 240 NQDNANCAPA IVPNNEQLIQ LISKINSFPP PTNATTKLPV SDNLEITIRE ASSEHQSGSS 300 PNSSSQSTLN LLGVLPHASP VSVPEVSAMP SQRSSRSSDS EKTKSADTYQ PGPLVLRKQK 360 TLDLSSFGGE RSSNSCHYPV EDSNSQDTQA NLPLQLFFSS PEDNNSPPKM ANSSKYFSSD 420 SSNQNEDRSP SSSPGVQLFP VKPSKQRVNH DRITDVVNAT TQVGRTPCGT VSFDLFGGSN 480 KGVEVDFFRG SPNQAGYASP VSATSPSSST CGAQDLTGRI LFKLFDKDPS HLPVALRSEI 540 SAWLSNSPSQ MESYIRPGCV VLSVYVSMPS SSWERLEQNL LDHVSWLLQR KDIDIWRDGR 600 FLVQIRKQLA SHNNGKLRLC KSWITPKAPE LISISPLAIV GGHETCVHLR GRNLNSGTKI 660 HCTYMGGYIT KDILDTTVQD STCDGTRSCS CEIHIAAPSG TGRYFIEVES GFKGNSFPII 720 VADSAICSEL RQLESEFEAD LNASDDQDSD VLWPKEEVLH FLNELGWLFQ TKGSSSTLEY 780 SIYRFKFLLT FSVEKDFSVL VKKLLDILVE EKMSSDGIPA EVSEMVSAIQ LLHRAVKKRC 840 RKMIDMLINY YIVSSDPNPS KIYVFPPNIA GPGGVTPLHI AACTSESEDL IDALTNDPLE 900 LGLYSWESQL DESGQSSCAH ATLRNNLSYN LLVARKLADR RNNQISLLVE ENETMEQAWV 960 ERSPAGSHVL KHKPTSCSQC AAVAARCNNR RRVPGSHGMV ARPFILSMLA IAAVCVCVCL 1020 YYRGYPRTGM VSPFTWEKLD YGTI*

Sequence ? help Back to Top

Protein Sequence Length: 1045 aa Download sequence Send to blast

MARKRDLSYQ QQELMIDQPY HPSGGLQNSR DYWNSKGWNW DCTRFVAQQV NQNAMNLDIP  60
VQSTQNKSNI NGVAVEDDGS LCLKLGSGSG GSSSSDEPQL RPAKRVAASP GGKNSRSPGA  120
GGNGNHPTCQ VDSCMVDLSD AKDYHRRHKV CEAHSKATQA LVGKQMQRFC QQCSRFHVLS  180
EFDEGKRSCR RRLAGHNRRR RKTQPDDATS RLLSAGGQEN AVNTGLDLVG LLAALARAQG  240
NQDNANCAPA IVPNNEQLIQ LISKINSFPP PTNATTKLPV SDNLEITIRE ASSEHQSGSS  300
PNSSSQSTLN LLGVLPHASP VSVPEVSAMP SQRSSRSSDS EKTKSADTYQ PGPLVLRKQK  360
TLDLSSFGGE RSSNSCHYPV EDSNSQDTQA NLPLQLFFSS PEDNNSPPKM ANSSKYFSSD  420
SSNQNEDRSP SSSPGVQLFP VKPSKQRVNH DRITDVVNAT TQVGRTPCGT VSFDLFGGSN  480
KGVEVDFFRG SPNQAGYASP VSATSPSSST CGAQDLTGRI LFKLFDKDPS HLPVALRSEI  540
SAWLSNSPSQ MESYIRPGCV VLSVYVSMPS SSWERLEQNL LDHVSWLLQR KDIDIWRDGR  600
FLVQIRKQLA SHNNGKLRLC KSWITPKAPE LISISPLAIV GGHETCVHLR GRNLNSGTKI  660
HCTYMGGYIT KDILDTTVQD STCDGTRSCS CEIHIAAPSG TGRYFIEVES GFKGNSFPII  720
VADSAICSEL RQLESEFEAD LNASDDQDSD VLWPKEEVLH FLNELGWLFQ TKGSSSTLEY  780
SIYRFKFLLT FSVEKDFSVL VKKLLDILVE EKMSSDGIPA EVSEMVSAIQ LLHRAVKKRC  840
RKMIDMLINY YIVSSDPNPS KIYVFPPNIA GPGGVTPLHI AACTSESEDL IDALTNDPLE  900
LGLYSWESQL DESGQSSCAH ATLRNNLSYN LLVARKLADR RNNQISLLVE ENETMEQAWV  960
ERSPAGSHVL KHKPTSCSQC AAVAARCNNR RRVPGSHGMV ARPFILSMLA IAAVCVCVCL  1020
YYRGYPRTGM VSPFTWEKLD YGTI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-30	119	202	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009372667.1	0.0	PREDICTED: squamosa promoter-binding-like protein 14
TrEMBL	F6I6X1	0.0	F6I6X1_VITVI; Uncharacterized protein
STRING	XP_009372667.1	0.0	(Pyrus x bretschneideri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Link Out ? help Back to Top
Phytozome	Kalax.0234s0025.1.p