PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0232s0023.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 302aa MW: 32750.1 Da PI: 7.6652

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0232s0023.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.4	9.3e-12	51	97	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er RR+++ f L l+P++ +K +Ka+i+e Av Y++sL+ Kalax.0232s0023.1.p 51 HIQTERERRRKMSGMFGALHALIPHL----PPKTDKATIVESAVSYVRSLE 97 8899*******************6....39**************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.07E-14	44	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.31	46	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-13	51	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-9	51	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.04E-12	51	101	No hit	No description
SMART	SM00353	3.3E-9	52	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
LSLWGAGGEE VEKGNGSAKR EELRKAVAGG GEKGEDEGAA AAAEEQQVEL HIQTERERRR 60 KMSGMFGALH ALIPHLPPKT DKATIVESAV SYVRSLEERL QILQHRKQEK IEQAKNGVGF 120 NPFPPSPSSM IPLQPHPPPY EPMALPADHH LHSSASSRSI TPPNSNPTTP TTHNAPGSPI 180 MMLNPNSNSS SSPRETSVKL TLSPSSVMFR TFTSKNVVLC VCGEEASFNI CGARRPGFYT 240 GIASVLDKYR LEVKSCHISS DPQSNRTTLM IQAQATALLD QYPAEEIYKR AAVEMVQVVS 300 F*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	3e-20	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0232s0023.1.p