PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0229s0034.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 631aa    MW: 70425.2 Da    PI: 4.8239
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0229s0034.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.000284564871855
                          HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++f++Lr+++P+a   +    +Ka++Le+++ ++++L+
  Kalax.0229s0034.1.p 456 ERFSTLRSMIPSA---G---ADKASVLEETIMHVQKLE 487
                          68**********9...4...8999**********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.8E-5018204IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000830.00233451490No hitNo description
Gene3DG3DSA:4.10.280.102.3E-5456501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-5456505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MDKDQEEMED VRLAPGNLRQ LLGVTVRSVQ WSYAIFWSMS RTKQGVLEWG DGYYNGDIKT  60
RKISQAMDVV KADKMGLERS KLLRELYELL LEGENCEEEQ QAARPSNADL CPEDLSDAEW  120
YYMVCMSFEF NLGQGLPGRA LANGQTIWLR NAQYADGKLF TRSLLAKSAS VQTVLCFPYL  180
GGVMELGTTE LVLEDPALIQ RVKTSLLEFS KPGYNVNWTF GPYSTDSDED PVCVDAKMNT  240
LQNVQLGAEN IKAEDEEMRL DGHSEDSDEE LGAGLPDCSS DTSGGNHQSH VYSWHLTDGY  300
FGADFLGFTN SSDCASQVVE SPADTKISEP RSGSPNAPNC LQENNCIKPD AQDNGSSDEL  360
HYRKVISTIL RKSNQLTGSL GCSASGYACR SGFRAWKNRG AATSRRLLDR QRILKKTLFT  420
IPLMYSKGFI KPETEQIGKK AGDKPNDGMS RILEHERFST LRSMIPSAGA DKASVLEETI  480
MHVQKLEARL GELESSVGNT RQDPNWEPSR VPRDDTAEQV SDNSESERKI LKQKRKVYEC  540
ESASEVNSSL KVVIMEQEVS IEVTCRCREY LLLDIMDAVN RLQLDAHLVH SATHEELFTL  600
KLKSKFRGTG VVPSGRVVKQ MIWESICEEV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-18182109195Transcription factor MYC3
4rqw_B2e-18182109195Transcription factor MYC3
4rru_A3e-181820248227Transcription factor MYC3
4rs9_A2e-18182109195Transcription factor MYC3
4ywc_A3e-181820248227Transcription factor MYC3
4ywc_B3e-181820248227Transcription factor MYC3
4yz6_A2e-18182109195Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017969803.11e-172PREDICTED: transcription factor EGL1
TrEMBLF6I6291e-167F6I629_VITVI; Uncharacterized protein
STRINGVIT_15s0046g02560.t011e-168(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.31e-112bHLH family protein