PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0229s0017.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 835aa MW: 90334.3 Da PI: 6.4146

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0229s0017.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.1	2.4e-21	138	193	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r +L+k+l+L++rqVk+WFqNrR+++k Kalax.0229s0017.1.p 138 KKRYHRHTPQQIQELEALFKECPHPDEKQRLQLSKRLNLETRQVKFWFQNRRTQMK 193 688999***********************************************999 PP
2	START	206.4	1.1e-64	347	570	1	205
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 e+a++a++el+k+a+ +ep+W k s e++n++e++++f++ + + +ea+r++gvv+ ++ lve l+d++ +W e+++ Kalax.0229s0017.1.p 347 EVALAAMDELIKLAQTDEPLWIKGSeggrEILNREEYMRTFTPCMGmkpngYVTEASRETGVVIINSLALVENLMDSN-RWAEMFPgmia 435 6899***********************************9987799999***********************.******* PP EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160 +a+t+evis+g g lqlm +elq+lsplvp R+++f+R+++q+ +g+w++vdvS++s ++ + + + ++++lpSg+l+e+++ng Kalax.0229s0017.1.p 436 RAATIEVISNGmggtrnGSLQLMHTELQVLSPLVPvREVTFLRFCKQHAEGVWAVVDVSIESVRNSSGAPAYEKCRRLPSGCLVEDMPNG 525 **************************************************************99****************** PP EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 +skvtwveh++++++ +h+l+r+l++sgl +ga++wvatlqrq + Kalax.0229s0017.1.p 526 YSKVTWVEHAEYDESEVHQLYRPLLSSGLGFGAQRWVATLQRQSQ 570 ****************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.76E-21	125	195	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.8E-22	128	189	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.123	135	195	IPR001356	Homeobox domain
SMART	SM00389	1.1E-19	136	199	IPR001356	Homeobox domain
Pfam	PF00046	6.4E-19	138	193	IPR001356	Homeobox domain
CDD	cd00086	1.64E-18	140	195	No hit	No description
PROSITE pattern	PS00027	0	170	193	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	43.887	338	574	IPR002913	START domain
CDD	cd08875	3.50E-123	342	570	No hit	No description
SuperFamily	SSF55961	1.92E-32	343	571	No hit	No description
Pfam	PF01852	1.8E-56	347	570	IPR002913	START domain
SMART	SM00234	2.6E-51	347	571	IPR002913	START domain
SuperFamily	SSF55961	1.88E-22	599	827	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 835 aa Download sequence Send to blast
MSFGGFIDST ASATDGSGAA RFVSDLHFNS SSSDSPGKGM MLSNGVFSQQ QRLVGQTFSK 60 SIFSSPALSL ALQTGLEAQG EVMRIGESYD GGGGVSGGVG GRRSREEEHE SRSGSDNMDG 120 GSADDLDAAD INPSKKKKKR YHRHTPQQIQ ELEALFKECP HPDEKQRLQL SKRLNLETRQ 180 VKFWFQNRRT QMKTQIERHE NSMLRSENDK LRAENMSLRE AMRNPMCVHC GGPAIIGESS 240 LEEQHLRLEN ARLRDELERV CGLASKFLGQ PVSALGNGHM LQMCSNLELG VGNNNCNGGL 300 STSLPFGPDF GADMFSSSGA VAVNRSAINN YNATCMDKTP ERSVLLEVAL AAMDELIKLA 360 QTDEPLWIKG SEGGREILNR EEYMRTFTPC MGMKPNGYVT EASRETGVVI INSLALVENL 420 MDSNRWAEMF PGMIARAATI EVISNGMGGT RNGSLQLMHT ELQVLSPLVP VREVTFLRFC 480 KQHAEGVWAV VDVSIESVRN SSGAPAYEKC RRLPSGCLVE DMPNGYSKVT WVEHAEYDES 540 EVHQLYRPLL SSGLGFGAQR WVATLQRQSQ CLAILMSSAV PSGDNSAITA SGRKSMVKLA 600 QRLTNNFCAG VCASTVHKWN KLSSGNVGDD IRVMTRKSVN DPGEPPGIVL SAATSVWLPV 660 PPQRIFDFLR NESLRSEWDI LSNGGPMQEM ARIAKGQDHG NCVSLLRAGA MNPNQSSMLI 720 LQETCTDAAG SLVVYAPVDI PAMHVVMNGG DSAYVALLPS GFSIVPDGSS STVRPRGSNP 780 NPSGPVEGSL LTVAFQILVS SLPTAKLTVE SVDTVSNLIS CTVQKIKAAL NCEN*

Sequence ? help Back to Top

Protein Sequence Length: 835 aa Download sequence Send to blast

MSFGGFIDST ASATDGSGAA RFVSDLHFNS SSSDSPGKGM MLSNGVFSQQ QRLVGQTFSK  60
SIFSSPALSL ALQTGLEAQG EVMRIGESYD GGGGVSGGVG GRRSREEEHE SRSGSDNMDG  120
GSADDLDAAD INPSKKKKKR YHRHTPQQIQ ELEALFKECP HPDEKQRLQL SKRLNLETRQ  180
VKFWFQNRRT QMKTQIERHE NSMLRSENDK LRAENMSLRE AMRNPMCVHC GGPAIIGESS  240
LEEQHLRLEN ARLRDELERV CGLASKFLGQ PVSALGNGHM LQMCSNLELG VGNNNCNGGL  300
STSLPFGPDF GADMFSSSGA VAVNRSAINN YNATCMDKTP ERSVLLEVAL AAMDELIKLA  360
QTDEPLWIKG SEGGREILNR EEYMRTFTPC MGMKPNGYVT EASRETGVVI INSLALVENL  420
MDSNRWAEMF PGMIARAATI EVISNGMGGT RNGSLQLMHT ELQVLSPLVP VREVTFLRFC  480
KQHAEGVWAV VDVSIESVRN SSGAPAYEKC RRLPSGCLVE DMPNGYSKVT WVEHAEYDES  540
EVHQLYRPLL SSGLGFGAQR WVATLQRQSQ CLAILMSSAV PSGDNSAITA SGRKSMVKLA  600
QRLTNNFCAG VCASTVHKWN KLSSGNVGDD IRVMTRKSVN DPGEPPGIVL SAATSVWLPV  660
PPQRIFDFLR NESLRSEWDI LSNGGPMQEM ARIAKGQDHG NCVSLLRAGA MNPNQSSMLI  720
LQETCTDAAG SLVVYAPVDI PAMHVVMNGG DSAYVALLPS GFSIVPDGSS STVRPRGSNP  780
NPSGPVEGSL LTVAFQILVS SLPTAKLTVE SVDTVSNLIS CTVQKIKAAL NCEN*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010661562.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	F6I316	0.0	F6I316_VITVI; Uncharacterized protein
STRING	VIT_15s0048g02000.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Kalax.0229s0017.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]