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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Kalax.0225s0045.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
| Family |
SRS |
| Protein Properties |
Length: 318aa MW: 32865.8 Da PI: 7.626 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kalax.0225s0045.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 187.5 | 5.1e-58 | 97 | 250 | 5 | 154 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...kskkqsalsstkl 91
+++CqdCGnqakkdC h+RCRtCCksrg++C+th+kstWvpa++rrerq +++ s + +a + k+ r ++++++ s++ +
Kalax.0225s0045.1.p 97 GSACQDCGNQAKKDCCHRRCRTCCKSRGYECSTHIKSTWVPASRRRERQLLTSSVSMSVSAC---SGVKKARLVslnAATSHTSNSNMPV 183
679*********************************************87777765554443...3333333331112222333333333 PP
DUF702 92 ssaeskkeletss.......lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+s e+++ + lP ++ ++a f+cv+v+s++dge+e+ Yq+ v+igGhvfkG+Ly+qG e+
Kalax.0225s0045.1.p 184 ESFETSSCH---QdasfketLPGQILAPATFKCVKVTSINDGEDEFVYQAMVKIGGHVFKGFLYNQGEES 250
332222222...12335556***********************************************875 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 318 aa
Download sequence Send
to blast |
MGMGGLRDLF VVSPTSSFHH SSLNEPSLMA EGLGSGNPAT ALGVGLGVIP LLTAVPCVAE 60
GAGANGRSGG GGIQLWQSHA QNGGNNNNNA SVLQTIGSAC QDCGNQAKKD CCHRRCRTCC 120
KSRGYECSTH IKSTWVPASR RRERQLLTSS VSMSVSACSG VKKARLVSLN AATSHTSNSN 180
MPVESFETSS CHQDASFKET LPGQILAPAT FKCVKVTSIN DGEDEFVYQA MVKIGGHVFK 240
GFLYNQGEES GTREHQQQGL PNISDLHLGG GNGGCILHKG GCSMTDLEAP LADVYGGASN 300
SGGGMLGGTG YGNPIIN*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | GQ847757 | 0.0 | GQ847757.1 Kalanchoe blossfeldiana cultivar Celine SHI-related protein SRS1 mRNA, partial cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.2 | 3e-70 | Lateral root primordium (LRP) protein-related |
