PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0223s0039.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 319aa    MW: 36158.1 Da    PI: 6.7881
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0223s0039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12.1e-1866113148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+WT eEd  l  +++++G g+W++ ar+ g++Rt+k+c++rw++yl
  Kalax.0223s0039.1.p  66 RGPWTVEEDHTLMSYIAKHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 113
                          89********************************************97 PP
2Myb_DNA-binding51.32.7e-16119162146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Kalax.0223s0039.1.p 119 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 162
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.38861117IPR017930Myb domain
SuperFamilySSF466892.25E-3163160IPR009057Homeodomain-like
SMARTSM007176.9E-1465115IPR001005SANT/Myb domain
PfamPF002496.6E-1766113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2367120IPR009057Homeodomain-like
CDDcd001678.88E-1168113No hitNo description
SMARTSM007171.3E-14118166IPR001005SANT/Myb domain
PROSITE profilePS5129418.707118168IPR017930Myb domain
PfamPF002495.4E-15119162IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-23121167IPR009057Homeodomain-like
CDDcd001672.67E-7139162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEGYMNGRSV AAEKQQQYYS NMSSLVGGGG VAMSSNSNNQ NHHKVQSSSS GEEEEDEMGM  60
MMDLRRGPWT VEEDHTLMSY IAKHGEGRWN SLARCAGLKR TGKSCRLRWL NYLRPDVRRG  120
NITLEEQLLI LELHSRWGNR WSKIAQHLPG RTDNEIKNYW RTRVQKHAKQ LKCDVNSKQF  180
KDTMRYLWMP RLVERIQAAA AANGASSPLS PASDMAEDYQ MPGSCYNLNN NVDYFTGSNN  240
GGQICYSDSL ISPAGYYHPQ AADFPSMEQH SSNNQNSSGL ISNNLNQWLV EGGDLSDNMW  300
NVEDIWLLQQ QQLNNNNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-256316024120MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028115735.11e-113transcription factor MYB108-like
TrEMBLA0A1S4DCZ61e-107A0A1S4DCZ6_TOBAC; transcription factor MYB108-like
TrEMBLA0A1U7XQE91e-107A0A1U7XQE9_NICSY; transcription factor MYB108-like
STRINGXP_009791846.11e-107(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-81myb domain protein 78