PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Publication

Basic Information? help Back to Top

TF ID

Kalax.0218s0020.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

GATA

Protein Properties

Length: 305aa MW: 32384.4 Da PI: 7.5297

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0218s0020.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	52.9	5e-17	222	256	1	33
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 C nCgt++ Tp++Rrgp+g++tLCnaCGl+++ k Kalax.0218s0020.1.p 222 CKNCGTSSkhTPMMRRGPEGPRTLCNACGLKWANK 256 ********************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00979	7.6E-8	85	120	IPR010399	Tify domain
PROSITE profile	PS51320	12.618	85	120	IPR010399	Tify domain
Pfam	PF06200	7.9E-10	88	119	IPR010399	Tify domain
Pfam	PF06203	1.6E-16	151	193	IPR010402	CCT domain
PROSITE profile	PS51017	13.424	151	193	IPR010402	CCT domain
PROSITE profile	PS50114	9.104	216	251	IPR000679	Zinc finger, GATA-type
SMART	SM00401	8.8E-11	216	272	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	6.65E-10	216	258	No hit	No description
Gene3D	G3DSA:3.30.50.10	7.3E-14	220	256	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.11E-11	221	271	No hit	No description
PROSITE pattern	PS00344	0	222	249	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	1.4E-14	222	257	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MPDSHHHQMA SMYPSEAMSI GAQMENADAL VDGGGGQFGD SGVGQFEHHQ IEDEAARDGV 60 LTGPVEAVPP HSMYPLPGAD FGAGTGAGPN QLTLWFHGEA FVFEDVSAEK VQAVLLLLGG 120 YEVPGGANTG AVPQNERSIG DMYGRETQQK RAAALSRFRE KKKDRCFDKK IRYSVRKEVA 180 HRMKRKKGQF VSSKASSEDM GSGSSDGNAS PGAAKEEQET SCKNCGTSSK HTPMMRRGPE 240 GPRTLCNACG LKWANKIVLG KCPGTQNPSM KAAIRVDQTG GEKNGPVAMP SITDLVCFIS 300 TAQP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028093060.1	4e-88	GATA transcription factor 28-like isoform X1
Refseq	XP_028093061.1	3e-88	GATA transcription factor 28-like isoform X2
Swissprot	Q8GXL7	8e-59	GAT24_ARATH; GATA transcription factor 24
TrEMBL	A0A2R6Q694	2e-87	A0A2R6Q694_ACTCH; GATA transcription factor
STRING	VIT_03s0038g00480.t01	5e-86	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21175.2	5e-54	ZIM-like 1

Link Out ? help Back to Top
Phytozome	Kalax.0218s0020.1.p

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376]